A Review of Family-Based Tests for Linkage Disequilibrium between a Quantitative Trait and a Genetic Marker

Keywords

Biology, Linkage disequilibrium, Genetics, Quantitative trait locus, Disequilibrium

References

• Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM).Richard S. Spielman, Ralph McGinnis, Warren J. Ewens — 1993
• Implementing a unified approach to family‐based tests of associationNan M. Laird, Steve Horvath, Xin Xu — 2000
• Removing the sampling restrictions from family-based tests of association for a quantitative-trait locus.Stephanie A. Monks, N. Kaplan — 2000
• A transmission disequilibrium test for quantitative trait loci.Daniel Rabinowitz — 1997
• In silico method for inferring genotypes in pedigreesJoshua Burdick, Wei‐Min Chen, Gonçalo R. Abecasis — 2006
• Power and design considerations for a general class of family-based association tests: quantitative traits.Christoph Lange, Dawn L. DeMeo, Nan M. Laird — 2002
• Transmission/disequilibrium tests for quantitative traitsXiaofeng Zhu, Robert C. Elston — 2001
• Tests for linkage and association in nuclear families.Eden R. Martin, N. Kaplan, B. S. Weir — 1997
• A general test of association for quantitative traits in nuclear families.Gonçalo R. Abecasis, Lon R. Cardon, W. O. C. M. Cookson — 2000
• A unified mixed-model method for association mapping that accounts for multiple levels of relatednessJianming Yu, Gaël Pressoir, William H. Briggs — 2006
• A new multipoint method for genome-wide association studies by imputation of genotypesJonathan Marchini, Bryan Howie, Simon Myers — 2007

Cited by

• Etude des relations génotype/phénotype dans le rétinoblastomeLaurent Castéra — 2012
• Design and Interpretation of Linkage and Association Studies on OsteoporosisTing Xu, Yu Cheng, Yan Guo — 2010
• Variance-Components Methods for Linkage and Association Analysis of Ordinal Traits in General PedigreesGuoqing Diao, D. Y. Lin — 2009
• Alpha-tryptase gene variation is associated with levels of circulating IgE and lung function in asthmaAhmed Abdelmotelb, Matthew Rose‐Zerilli, Sheila J. Barton — 2013
• Replication of CNTNAP2 association with nonword repetition and support for FOXP2 association with timed reading and motor activities in a dyslexia family sampleBeate Peter, Wendy H. Raskind, Mark Matsushita — 2010
• Robust QTL fine mapping by applying a quantitative transmission disequilibrium test to the Mendelian sampling term.Henner Simianer, E.C.G. Pimentel — 2009
• Twins for epigenetic studies of human aging and developmentQihua Tan, Lene Christiansen, Mads Thomassen — 2012
• Pedigree transmission disequilibrium test for quantitative traits in farm animalsXiangdong Ding, Chonglong Wang, Qin Zhang — 2012
• A statistical framework for testing the causal effects of fetal driveNianjun Liu, Edward Archer, Vinodh Srinivasasainagendra — 2015
• Dissecting complex phenotypes using the genomics of twinsQihua Tan, Kirsten Ohm Kyvik, Torben A. Kruse — 2010
• Fast dimension-reduced climate model calibration and the effect of data aggregationWon Chang, Murali Haran, Roman Olson — 2013
• LEVERAGING LOCAL IDENTITY-BY-DESCENT INCREASES THE POWER OF CASE/CONTROL GWAS WITH RELATED INDIVIDUALSJoshua N. Sampson, Bill Wheeler, Peng Li — 2014
• Family-based designs for genome-wide association studiesJürg Ott, Yoichiro Kamatani, Mark Lathrop — 2011
• A Review of Genetic Association Analyses in Population and Family Based Data: Methods and SoftwareHyo‐Jung Lee, Minji Kim, Mi‐Ra Park — 2010
• A Rapid Generalized Least Squares Model for a Genome-Wide Quantitative Trait Association Analysis in FamiliesXiang Li, Saonli Basu, Michael B. Miller — 2011
• Population structure and association mapping of flower-related traits in lotus (Nelumbo Adans.) accessionsMei Yang, Lingping Zhu, Liming Xu — 2014
• Gene-environment interaction tests for family studies with quantitative phenotypes: A review and extension to longitudinal measuresHortensia Moreno-Macías, Isabelle Romieu, Stephanie J. London — 2010
• The causal meaning of Fisher’s average effectJames J. Lee, Carson C. Chow — 2013
• Twin-based DNA methylation analysis takes the center stage of studies of human complex diseases.Dongfeng Zhang, Shuxia Li, Qihua Tan — 2012
• Second-generation PLINK: rising to the challenge of larger and richer datasetsChristopher Chang, Carson C. Chow, Laurent CAM Tellier — 2014

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