The landscape of histone modifications across 1% of the human genome in five human cell lines.

Keywords

H3K4me3, Histone, Biology, Histone H3, Acetylation

References

• Close sequence comparisons are sufficient to identify human cis-regulatory elements.Shyam Prabhakar, Francis Poulin, Malak Shoukry — 2005
• Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays.Daniel Robyr, Siavash K. Kurdistani, Michael Grunstein — 2004
• Histone acetylation in chromatin structure and transcriptionMichael Grunstein — 1997
• Bioinformatics and Computational Biology Solutions Using R and BioconductorRobert Gentleman, Irizarry, Rafael A, Huber, Wolfgang — 2006
• Non-coding RNA.John S. Mattick, Igor V. Makunin — 2006
• Methylation of histone H3 lysine 9 creates a binding site for HP1 proteinsMonika Lachner, Dónal O’Carroll, Stephen Rea — 2001
• Antisense Transcription in the Mammalian TranscriptomeShintaro Katayama, Yuji Tomaru, Takeya Kasukawa — 2005
• A bivalent chromatin structure marks key developmental genes in embryonic stem cells.B Bernstein, Tarjei S. Mikkelsen, Xiaohui Xie — 2006
• The diverse functions of histone lysine methylationCyrus Martin, Yi Zhang — 2005
• Global and Hox-specific roles for the MLL1 methyltransferase.Matthew G. Guenther, Richard G. Jenner, B. Chevalier — 2005
• Computational detection and location of transcription start sites in mammalian genomic DNA.Thomas A. Down, Tim Hubbard — 2002
• Histone acetylation and deacetylation in yeastSiavash K. Kurdistani, Michael Grunstein — 2003
• Genomic maps and comparative analysis of histone modifications in human and mouse.B Bernstein, Michael Kamal, Kerstin Lindblad‐Toh — 2005
• Role of Histone H3 Lysine 27 Methylation in Polycomb-Group SilencingRu Cao, Liangjun Wang, Hengbin Wang — 2002
• Active genes are tri-methylated at K4 of histone H3Helena Santos-Rosa, Robert Schneider, Andrew J. Bannister — 2002
• Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin.Christopher R. Vakoc, Sean A. Mandat, Benjamin A. Olenchock — 2005
• Histone H3 lysine 4 methylation patterns in higher eukaryotic genesRobert Schneider, Andrew J. Bannister, Fiona A. Myers — 2004
• WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.Joanna Wysocka, Tomek Swigut, Thomas A. Milne — 2005
• Do protein motifs read the histone code?Xavier de la Cruz, Sergio Lois, Sara Sánchez-Molina — 2005
• The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3Paul A. Cloos, Jesper Christensen, Karl Agger — 2006

Cited by

• Interactions of transcription factors with chromatin.Harm van Bakel — 2011
• The Role of PTIP in Breast CancerLina Niu — 2012
• Extrapolating ENCODE data to the whole human genome.Albert Fabà — 2008
• The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5, Srf, Histone Modifications, and MicroRNAsJenny Schlesinger, Markus Schueler, Marcel Grunert — 2011
• Effects of deranged metabolism on epigenetic changes in cancerThomas H. Lee — 2015
• A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory NeuropathiesMiguel Rodríguez-Piñero y Bravo-Ferrer — 2016
• Global H4 acetylation analysis by ChIP-chip in SLE monocytesZhen‐Nan Zhang, Li Song, Kelly Maurer — 2009
• Rôle de la protéine Damaged DNA Binding 2 dans la réponse des cellules tumorales mammaires aux agents thérapeutiquesR. Klotz — 2014
• Computational biology approaches for studying gene regulatory network discovery and modellingRafik Salama — 2011
• Identification of epigenomic patterns to annotate regulatory elements in the human genomeJ.J.G. van Riel — 2014
• Multi-layered model of individual HIV infection progression and mechanisms of phenotypical expressionDimitri Perrin — 2008
• Cellular Adaptation of Macrophages to Anthrax Lethal Toxin-Induced Pyroptosis via Epigenetic MechanismsChae Young Han — 2013
• RHODOCOCCUS EQUI INFECTION AND INTERFERON-GAMMA REGULATION IN FOALSL. Sun — 2012
• Complexity and high-end computing in biology and medicine.Dimitri Perrin — 2011
• Multiple Sites of Type II Site Ligand (Luteolin and BMHPC) Regulation of Gene Expression in PC-3 CellsBarry M. Markaverich, Mary Vijjeswarapu — 2012
• RSV-Induced H3K4 Demethylase KDM5B Leads to Regulation of Dendritic Cell-Derived Innate Cytokines and Exacerbates Pathogenesis In VivoCatherine Ptaschinski, Sumanta Mukherjee, Martin L. Moore — 2015
• Genetic-epigenetic interactions in medulloblastoma developmentDolores Mary Hamilton — 2014
• Characterization of Interleukin 10 gene variations and serum levels as predictive factors for the clinical outcome of Non-Hodgkin Lymphoma patients and Analysis of molecular mechanisms of Interleukin 10 gene regulation in B cellsChristina Heemann — 2013
• Determinants of Embryonic Hematopoietic Stem Cell Emergence and MaturationGeon Kim — 2015
• H4K16 acetylation during embryonic stem cell differentiationGillian C.A. Taylor — 2013

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