ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.
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Summary
A computer program, ARAGORN, identifies tRNA and tmRNA genes using heuristic algorithms to predict tRNA secondary structure, based on homology with recognized tRNA consensus sequences and ability to form a base-paired cloverleaf.
- Type
- article
- Published
- 2004-01-16
- Cited by
- 2,623
- References
- 13
- Access
- Open access
- OpenAlex
- https://openalex.org/W1996053875
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2398959
Keywords
Biology, Transfer RNA, Gene, Genetics, RNA
References
- Compilation of tRNA sequences and sequences of tRNA genes
- BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences.
- Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.
- The tmRNA Website: invasion by an intron
- RNA sequence analysis using covariance models.
- Structure and transcription of eukaryotic tRNA genes.
- [A bacterial RNA that functions both as a tRNA and an mRNA].
- Identifying potential tRNA genes in genomic DNA sequences.
- tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter.
- Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA
- The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts
- A novel method for finding tRNA genes.
- tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
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- Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire
- Niche-dependent genetic diversity in Antarctic metaviromes
- Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria
- Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps
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- Characterization of chloroplast genomes of Alnus rubra and Betula cordifolia, and their use in phylogenetic analyses in Betulaceae
- Complete Genome Sequences of Mycobacteriophages Kwksand96 and Cane17
- Complete Genome Sequence of Halorubrum ezzemoulense Strain Fb21
- Curation and analysis of tRNA and aminoacyl-tRNA synthetase genes in the nuclear genome of Myceliophthora thermophila
- Characterisation of three bacteriophages infecting serovars of Salmonella enterica
- ProMED: a global early warning system for disease.
- In silico identification of genes in bacteriophage DNA.
- Molecular and bioinformatics approaches to redefine our understanding of ureaplasmas: Moving beyond serovars
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