Identifying potential tRNA genes in genomic DNA sequences.
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Summary
The new algorithm and testing strategy are a considerable improvement over any previously described strategies for recognizing tRNA genes, and they allow detections of genes (including introns) embedded in long genomic sequences.
- Type
- article
- Published
- 1991-08-05
- Cited by
- 131
- References
- 41
- OpenAlex
- https://openalex.org/W2073321994
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:25254863
Keywords
Genetics, Transfer RNA, Gene, Biology, genomic DNA
References
- Genes for stable RNA in the extreme thermophile Thermoproteus tenax: introns and transcription signals
- GenBank: current status and future directions
- Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria.
- A unique tRNA intron in the variable loop of the extreme thermophile Thermofilum pendens and its possible evolutionary implications.
- A human opal suppressor tRNA gene and pseudogene.
- The coding function of nucleotide sequences can be discerned by statistical analysis.
- IBM microcomputer programs that analyze DNA sequences for tRNA genes
- Expression of a set of synthetic suppressor tRNA(Phe) genes in Saccharomyces cerevisiae.
- Full length L1 retroposons contain tRNA-like sequences near the 5' termini--hypothesis on the replication mechanism of retroposons.
- The selenocysteine-inserting opal suppressor serine tRNA from E. coli is highly unusual in structure and modification.
- Nucleotide distribution and the recognition of coding regions in DNA sequences: an information theory approach.
- A program for the identification of tRNA-like structures in DNA sequence data
- Secondary structure of 16S ribosomal RNA.
- Structure of a Saccharomyces cerevisiae gene encoding minor (AGY)tRNA(Ser).
- Codon preference and its use in identifying protein coding regions in long DNA sequences
- A microcomputer program for the identification of tRNA genes
- Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
- Improved tools for biological sequence comparison.
- Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes
- Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements.
Cited by
- Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII.
- Multiplex sequencing of 1.5 Mb of the Mycobacterium leprae genome.
- Novel selenoproteins identified from genomic sequence data.
- Curation and analysis of tRNA and aminoacyl-tRNA synthetase genes in the nuclear genome of Myceliophthora thermophila
- R-FAP: Rapid Functional Annotation of Prokaryotes Using Taxon-specific Pan-genomes and 10-mer Peptides
- Règles de cohérence pour l'annotation génomique : développement et mise en oeuvre in silico et in vivo. (Coherency rules for genome annotation : implementation and application, in silico and in vivo)
- Quantification de la relation séquence-activité de l’ARN par prédiction de structure tridimensionnelle
- Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.
- Computational identification of RNA and protein components from the Signal Recognition Particle
- Exploring Codon-Anticodon Adaptation in Eukaryotes
- Structural rna homology search and alignment using covariance models
- Regulation by RNA.
- Predictive methods using nucleotide sequences.
- Annotating animal mitochondrial tRNAs: A new scoring scheme and an empirical evaluation of four methods
- Evolution of codon usage in bacteria
- Detection of tRNA Based on the Cloverleaf Secondary Structure
- Genomic DNA sequencing methods.
- Modeling RNA tertiary structure from patterns of sequence variation.
- (Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactéries
- Chromosomal organization and nucleotide sequence of the genes for elongation factors EF-1α and EF-2 and ribosomal proteins S7 and S10 of the hyperthermophilic archaeum Desulfurococcus mobilis
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