Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.
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Summary
A linear method for the search of eukaryotic nuclear tRNA genes in DNA databases is described, which relies on the recognition of two intragenic control regions known as A and B boxes, a transcription termination signal, and on the evaluation of the spacing between these elements.
- Type
- article
- Published
- 1994-04-11
- Cited by
- 109
- References
- 2
- Access
- Open access
- OpenAlex
- https://openalex.org/W1991398089
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:21842764
Keywords
Biology, Gene, Transfer RNA, Genetics, Intron
References
Cited by
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- Curation and analysis of tRNA and aminoacyl-tRNA synthetase genes in the nuclear genome of Myceliophthora thermophila
- Comparative studies on elongation and termination of the three RNA polymerases from S. cerevisiae in vitro
- Computational identification of RNA and protein components from the Signal Recognition Particle
- Exploring Codon-Anticodon Adaptation in Eukaryotes
- Structural rna homology search and alignment using covariance models
- Regulation by RNA.
- Predictive methods using nucleotide sequences.
- Annotating animal mitochondrial tRNAs: A new scoring scheme and an empirical evaluation of four methods
- The complete mitogenome of Fusarium culmorum
- Improving tRNAscan‐SE Annotation Results via Ensemble Classifiers
- (Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactéries
- Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence.
- Widespread occurrence of non-canonical transcription termination by human RNA polymerase III
- Evolution of tRNA-like sequences and genome variability.
- The Arginine Attenuator Peptide Interferes with the Ribosome Peptidyl Transferase Center
- RNA polymerase III transcription control elements: themes and variations.
- ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.
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