Genomic maps of lincRNA occupancy reveal principles of RNA-chromatin interactions
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Summary
ChIRP-seq of three lincRNAs reveal that RNA occupancy sites in the genome are focal, sequence-specific, and numerous, and ChIRP-seq is generally applicable to illuminate the intersection of RNA and chromatin with newfound precision genome-wide.
- Type
- article
- Published
- 2011-09-29
- Cited by
- 1,210
- References
- 45
- Access
- Open access
- OpenAlex
- https://openalex.org/W1979768717
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6065888
Keywords
Biology, Chromatin, RNA, Non-coding RNA, Occupancy
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- Transforming growth factor-β-induced lncRNA-Smad7 inhibits apoptosis of mouse breast cancer JygMC(A) cells
- Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features.
- lincRNA HOTAIR as a novel promoter of cancer progression
- MicroRNAs and lncRNAs in senescence: A re‐view
- Discovery and functional characterization of cardiovascular long noncoding RNAs.
- Pervasive lncRNA binding by epigenetic modifying complexes--The challenges ahead.
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- Two herpesviral noncoding PAN RNAs are functionally homologous but do not associate with common chromatin loci
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- Purification of specific chromatin regions using oligonucleotides: capture hybridization analysis of RNA targets (CHART).
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- Complexity of the RAR-mediated transcriptional regulatory programs.
- Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium
- In situ dissection of RNA functional subunits by domain-specific chromatin isolation by RNA purification (dChIRP).
- Unexpected roles of long non-coding RNAs in cancer biology
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