miRDB: an online database for prediction of functional microRNA targets
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Summary
By employing an improved algorithm for miRNA target prediction, this work presents updated transcriptome-wide target prediction data in miRDB, including 3.5 million predicted targets regulated by 7000 miRNAs in five species, and implements the new prediction algorithm into a web server allowing custom target prediction with user-provided sequences.
- Type
- article
- Published
- 2019-08-31
- Cited by
- 2,687
- References
- 17
- Access
- Open access
- OpenAlex
- https://openalex.org/W2970358232
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:202554301
Keywords
Database, microRNA, Online database, Computer science, Function (biology)
References
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- The Gene Ontology Resource: 20 years and still GOing strong
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- Identification of Long Noncoding RNA Associated ceRNA Networks in Rosacea
- The Potential Role of Selected miRNA in Uveal Melanoma Primary Tumors as Early Biomarkers of Disease Progression
- Serum miR-338-3p and miR-199b-5p are associated with the absolute neutrophil count in patients with resectable pancreatic cancer.
- Downregulated microRNA-130b-5p Prevents Lipid Accumulation and Insulin Resistance in a Murine model of Nonalcoholic Fatty Liver Disease.
- Leveraging mRNAs sequences to express SARS-CoV-2 antigens in vivo
- In-silico analysis of SARS-CoV-2 genomes: Insights from SARS encoded non-coding RNAs
- Long non-coding RNA PRNCR1 exerts oncogenic effects in tongue squamous cell carcinoma in vitro and in vivo by sponging microRNA-944 and thereby increasing HOXB5 expression
- A miR-205-LPCAT1 axis contributes to proliferation and progression in multiple cancers.
- MiR-146a-5p promotes IL-1β-induced chondrocyte apoptosis through the TRAF6-mediated NF-kB pathway
- Cholino‐ncRNAs modulate sex‐specific‐ and age‐related acetylcholine signals
- COVID-19 Virulence in Aged Patients Might Be Impacted by the Host Cellular MicroRNAs Abundance/Profile
- Variants in miRNA regulome and their association with the risk of nonsyndromic orofacial clefts.
- Novel role of ASH1L histone methyltransferase in anaplastic thyroid carcinoma
- Implications of SARS-CoV-2 Mutations for Genomic RNA Structure and Host microRNA Targeting
- A meta-analysis of gene expression data highlights synaptic dysfunction in the hippocampus of brains with Alzheimer’s disease
- Identification and validation of a six-lncRNA prognostic signature with its ceRNA networks and candidate drugs in lower-grade gliomas.
- SARS-CoV-2 genetic variations associated with COVID-19 severity
- MicroRNAs in Hematopoietic Stem Cell Aging.
- Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene
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