New tools for automated high-resolution cryo-EM structure determination in RELION-3
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Summary
CPU-based vector acceleration has been added in addition to GPU support, which provides flexibility in use of resources and avoids memory limitations in the third major release of RELION.
- Type
- article
- Published
- 2018-11-09
- Cited by
- 4,289
- References
- 68
- Access
- Open access
- OpenAlex
- https://openalex.org/W2899714098
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:53238075
Keywords
Computer science, Python (programming language), Computational science, Algorithm, Curvature
References
- A new generation of the IMAGIC image processing system.
- Alignment of cryo-EM movies of individual particles by optimization of image translations.
- 2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor
- Advances in Single-Particle Electron Cryomicroscopy Structure Determination applied to Sub-tomogram Averaging
- An atomic structure of human γ-secretase
- Detective quantum efficiency of electron area detectors in electron microscopy
- Structural analysis of haemin demetallation by L-chain apoferritins.
- The STAR file: a new format for electronic data transfer and archiving
- Beam-Induced Motion of Vitrified Specimen on Holey Carbon Film
- Semi-automated selection of cryo-EM particles in RELION-1.3
- Backbone structure of the infectious ε15 virus capsid revealed by electron cryomicroscopy
- Alignment of direct detection device micrographs using a robust Optical Flow approach.
- Correction of high-resolution data for curvature of the Ewald sphere.
- The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction.
- A Bayesian View on Cryo-EM Structure Determination
- DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy
- Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction
- 3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy
- Obtaining TEM images with a uniform deviation parameter.
- Coma-free alignment of high-resolution electron microscopes with the aid of optical diffractograms
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- Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer
- The complete structure of the human TFIIH core complex
- Structure of voltage-modulated sodium-selective NALCN-FAM155A channel complex
- Structure of the activated human minor spliceosome
- Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule
- Cryo-EM structures of the DCPIB-inhibited volume-regulated anion channel LRRC8A in lipid nanodiscs
- Structural organization of a Type III-A CRISPR effector subcomplex determined by X-ray crystallography and cryo-EM
- The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K
- Stepwise activation mechanism of the scramblase nhTMEM16 revealed by cryo-EM
- Fusion of DARPin to aldolase enables visualization of small protein by cryoEM
- Cryo-EM structures and functional characterization of the murine lipid scramblase TMEM16F
- Architectural principles for Hfq/Crc-mediated regulation of gene expression
- Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer’s and Pick’s diseases
- Structure of a cytochrome-based bacterial nanowire
- The mechanism of cross-talk between histone H2B ubiquitination and H3 methylation by Dot1L
- Structural basis for eIF2B inhibition in integrated stress response
- Structural basis of sterol recognition by human hedgehog receptor PTCH1
- Iron-sequestering nanocompartments as multiplexed Electron Microscopy gene reporters
- The Molecular Control of Calcitonin Receptor Signaling.
- Molecular mechanism of TRPV2 channel modulation by cannabidiol
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