TBtools, a Toolkit for Biologists integrating various HTS-data handling tools with a user-friendly interface
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Summary
TBtools is described, a Toolkit for Biologists integrating various HTS-data handling tools with a user-friendly interface that includes a large collection of functions, which facilitate many simple, routine but elaborate tasks working on HTS data.
- Type
- preprint
- Published
- 2018-03-27
- Cited by
- 1,528
- References
- 17
- Access
- Open access
- OpenAlex
- https://openalex.org/W2794911911
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:214722422
Keywords
Computer science, Interface (matter), User Friendly, Venn diagram, Application programming interface
References
- [GSDS: a gene structure display server].
- An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets
- Points of view: Sets and intersections
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- HemI: A Toolkit for Illustrating Heatmaps
- Gene Ontology: tool for the unification of biology
- GSDS 2.0: an upgraded gene feature visualization server
- FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci
- BLAST+: architecture and applications
- MEME Suite: tools for motif discovery and searching
- Circos: an information aesthetic for comparative genomics.
- KEGG: Kyoto Encyclopedia of Genes and Genomes
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data
- SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
- BioEdit: An important software for molecular biology
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- Comparative and Expression Analysis of Ubiquitin Conjugating Domain-Containing Genes in Two Pyrus Species
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- Genome-Wide Analysis of LRR-RLK Gene Family in Four Gossypium Species and Expression Analysis during Cotton Development and Stress Responses
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- Genome-wide characterization and expression analyses of the MYB superfamily genes during developmental stages in Chinese jujube
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