GSDS 2.0: an upgraded gene feature visualization server
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Summary
The upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure, and a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis.
- Type
- article
- Published
- 2014-12-10
- Cited by
- 3,678
- References
- 15
- Access
- Open access
- OpenAlex
- https://openalex.org/W2119205648
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:3743071
Keywords
Upload, Computer science, Source code, Visualization, Annotation
References
- Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice
- [GSDS: a gene structure display server].
- BAHD superfamily of acyl-CoA dependent acyltransferases in Populus and Arabidopsis: bioinformatics and gene expression
- PIECE: a database for plant gene structure comparison and evolution
- Auxin-related gene families in abiotic stress response in Sorghum bicolor
- Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa
- GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures
- The cellulose synthase superfamily in fully sequenced plants and algae
- FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci
- FeatureStack: Perl module for comparative visualization of gene features
- GECA: a fast tool for gene evolution and conservation analysis in eukaryotic protein families
- GPViz: dynamic visualization of genomic regions and variants affecting protein domains
Cited by
- Genome-wide identification and characterization of aquaporin gene family in moso bamboo (Phyllostachys edulis)
- Genome-Wide Analysis Suggests the Relaxed Purifying Selection Affect the Evolution of WOX Genes in Pyrus bretschneideri, Prunus persica, Prunus mume, and Fragaria vesca
- Comprehensive molecular analysis of arginase-encoding genes in common wheat and its progenitor species
- Genome-wide characterization of GRAS family genes in Medicago truncatula reveals their evolutionary dynamics and functional diversification
- Omega-3 fatty acid desaturase gene family from two ω-3 sources, Salvia hispanica and Perilla frutescens: Cloning, characterization and expression
- Genome-wide identification and classification of MYB superfamily genes in peach
- Genome-wide identification of FK506-binding domain protein gene family, its characterization, and expression analysis in tomato (Solanum lycopersicum L.).
- Molecular characterization of the genome-wide BOR transporter gene family and genetic analysis of BnaC04.BOR1;1c in Brassica napus
- Identification and Characterization of the EXO70 Gene Family in Polyploid Wheat and Related Species
- Genome-wide identification and comparative evolutionary analysis of the Dof transcription factor family in physic nut and castor bean
- Identification and expression analysis of ERECTA family genes in grape (Vitis vinifera L.)
- Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization
- Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis
- Genome-wide survey and expression analysis of the PUB family in Chinese cabbage (Brassica rapa ssp. pekinesis)
- Identification and Functional Analysis of the NADK Gene Family in Wheat
- Genome-wide identification, phylogeny, and expression analysis of the SWEET gene family in tomato.
- Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration
- Genome-wide identification of CAMTA gene family members in Medicago truncatula and their expression during root nodule symbiosis and hormone treatments
- Molecular evolution and species-specific expansion of the NAP members in plants.
- A genome-wide analysis of the auxin/indole-3-acetic acid gene family in hexaploid bread wheat (Triticum aestivum L.)
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