MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Keywords

Biology, Phylogenetic tree, Mega-, Phylogenetics, Divergence (linguistics)

References

• Estimating the Rate of Intersubtype Recombination in Early HIV-1 Group M StrainsMelissa J. Ward, Samantha Lycett, Marcia L. Kalish — 2012
• Estimating divergence times in large molecular phylogeniesKoichiro Tamura, Fabia U. Battistuzzi, Paul Billing-Ross — 2012
• The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small.Masatoshi Nei, Sudhir Kumar, Kei Takahashi — 1998
• TimeTree2: species divergence times on the iPhoneSudhir Kumar, S. Blair Hedges — 2011
• MEGA: Molecular Evolutionary Genetics Analysis software for microcomputersSudhir Kumar, Koichiro Tamura, Masatoshi Nei — 1994
• Precision of molecular time estimates.S. Blair Hedges, Sudhir Kumar — 2004
• MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysisSudhir Kumar, Glen Stecher, Daniel S. Peterson — 2012
• MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Koichiro Tamura, Daniel G. Peterson, Nora Peterson — 2011
• PAUP^* : Phylogenetic Analysis Using Parsimony (and other methods) 4.0b8David L. Swofford — 2001
• Molecular Evolution and PhylogeneticsA. Oskooi — 2008
• MEGA 5 : Molecular Evolutionary Genetics Analysis using Maximum Likelihood , Evolutionary Distance , and Maximum Parsimony MethodsK. Tamura, D. Peterson, N. Peterson — 2011
• PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]M. P. Cummings — 2004

Cited by

• Cloning of two members of the calcitonin-family receptors from stingray, Dasyatis akajei: possible physiological roles of the calcitonin family in osmoregulation.John M. Huels — 2012
• Molecular confirmation of Trichomonas gallinae and other parabasalids from Brazil using the 5.8S and ITS-1 rRNA regions.靖 佐野, 健一 山田, 博子 清水 — 2012
• Functional characterization of a tomato COBRA-like gene functioning in fruit development and ripeningP. Z. Sobocinski, K. M. Hartley, Adelbert S. Evans — 2012
• Anaplasma odocoilei sp. nov. (family Anaplasmataceae) from white-tailed deer (Odocoileus virginianus)W.A. Jester, K.A. Uhler — 2012
• Cohnella formosensis sp. nov., a xylanolytic bacterium isolated from the rhizosphere of Medicago sativa L.Rodolfo Gijón Belmonte — 2013
• Identification of an Emergent Porcine Circovirus-2 in Vaccinated Pigs from a Brazilian Farm during a Postweaning Multisystemic Wasting Syndrome Outbreak洋子 藤弘, 文子 古賀 — 2014
• An O-Acetylserine (thiol) Lyase from Leucaena leucocephala Is a Cysteine Synthase But Not a Mimosine SynthaseDaniel Rodríguez Ruiz de Villa — 2014
• Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV ClusteringVlad Novitsky, Sikhulile Moyo, Quanhong Lei — 2015
• Functional characterization and phylogenetic analysis of acquired and intrinsic macrolide phosphotransferases in the Bacillus cereus group.Coopinel — 2015
• Is atomic rearrangement of type IV PHA synthases responsible for increased PHA production?Aamira Tariq, Abdul Hameed, Habib Bokhari — 2015
• Overexpression of the Aspergillus niger GatA transporter leads to preferential use of D-galacturonic acid over D-xyloseÁlvaro Aunós Gómez — 2014
• Novel locked nucleic acid (LNA)-based probe for the rapid identification of Chlamydia suis using real-time PCR大輔 堤, Daisuke Tsutsumi — 2014
• Identification of a natural recombination in the F and H genes of feline morbillivirus.秀実 羽根田 — 2014
• The ecological dichotomy of ammonia-oxidizing archaea and bacteria in the hyper-arid soils of the Antarctic Dry ValleysF. Xavier Menéndez i Pablo — 2014
• A new quadrannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from central Honshu, JapanJane-Louise Lampard, Heather Chapman, Helen Stratton — 2014
• Evolution of Metallo-β-lactamases: Trends Revealed by Natural Diversity and in vitro EvolutionD. K. Sharma — 2014
• Genotyping of Acanthamoeba T15: the environmental strain in Turkey.K. Aurand — 2015
• Sequencing and phylogenetic analysis identifies candidate members of a new picornavirus genus in terrestrial tortoise speciesAna Isabel Berrocal Lanzarot — 2015
• IDENTIFICATION OF A NOVEL INTERTYPIC RECOMBINANT SPECIES D HUMAN ADENOVIRUS IN A PEDIATRIC STEM CELL TRANSPLANT RECIPIENTAdriana E. Kajon, Daryl M. Lamson, Matthew Shudt — 2014
• A 454 sequencing approach to dipteran mitochondrial genome research.敏行 天明, 剛 伊藤, 大志 濱崎 — 2015

Related papers

• Alignment of protein sequences by their profilesMarc A. Martı́-Renom, M. S. Madhusudhan, Andrej Šali — 2004
• Homology-extended sequence alignmentV. A. Simossis — 2005
• MEGA: Molecular Evolutionary Genetics Analysis, Version 1.02.Paul O. Lewis, Sanjeev Kumar, Koichiro Tamura — 1995
• Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problemsCatherine S. Grasso, Christopher Lee — 2004
• INTERALIGN: interactive alignment editor for distantly related protein sequencesOlivier Pible, G. Imbert, Jean‐Luc Pellequer — 2005
• ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approachDimitrios P. Lyras, Dirk Metzler — 2014
• ALIGN_MTX - An optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignmentBoris Vishnepolsky, Malak Pirtskhalava — 2009
• Grammar-based distance in progressive multiple sequence alignmentDavid J. Russell, Hasan H. Otu, Khalid Sayood — 2008
• Optimization of multiple‐sequence alignment based on multiple‐structure alignmentMaxim Shatsky, Ruth Nussinov, Haim J. Wolfson — 2005