SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
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Summary
The efficiency and usability of SeqKit enable researchers to rapidly accomplish common FASTA/Q file manipulations and demonstrates competitive performance in execution time and memory usage compared to similar tools.
- Type
- article
- Published
- 2016-10-05
- Cited by
- 2,898
- References
- 13
- Access
- Open access
- OpenAlex
- https://openalex.org/W2529838505
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2779244
Keywords
Executable, Computer science, Usability, Operating system, Process (computing)
References
- Rapid and sensitive protein similarity searches.
- The Sequence Alignment/Map format and SAMtools
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- BEDTools: the Swiss-army tool for genome feature analysis
- bíogo: a simple high-performance bioinformatics toolkit for the Go language
- Efficient "pythonic" access to FASTA files using pyfaidx
- A novel algorithm for detecting multiple covariance and clustering of biological sequences
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