High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
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Summary
FastANI is developed, a method to compute ANI using alignment-free approximate sequence mapping, and it is shown 95% ANI is an accurate threshold for demarcating prokaryotic species by analyzing about 90,000 proKaryotic genomes.
- Type
- preprint
- Published
- 2017-11-27
- Cited by
- 5,023
- References
- 44
- Access
- Open access
- OpenAlex
- https://openalex.org/W2781226659
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:54026777
Keywords
Genome, Biology, Phylogenetic tree, Pairwise comparison, Computational biology
References
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- DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Cited by
- Dialogue on the nomenclature and classification of prokaryotes.
- Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
- Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle
- The population genetics of pathogenic Escherichia coli
- MetaCompass: Reference-guided Assembly of Metagenomes
- Assembly-free and alignment-free sample identification using genome skims
- How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
- A fast adaptive algorithm for computing whole-genome homology maps
- Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae
- Unexpected versatility in the metabolism and ecophysiology of globally relevant nitrite-oxidizing Nitrotoga bacteria
- Genomic profiling of four cultivated Candidatus Nitrotoga spp. predicts broad metabolic potential and environmental distribution
- Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14
- Emergence and features of the multipartite genome structure of the family Burkholderiaceae revealed through comparative and evolutionary genomics
- bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)
- Characterization of Emetic and Diarrheal Bacillus cereus Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges
- Prokaryotic species are sui generis evolutionary units.
- APPLES: Fast Distance-based Phylogenetic Placement
- Hidden diversity of soil giant viruses
- Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content
- Genomic insights into the metabolism of ‘Candidatus Defluviicoccus seviourii’, a member of Defluviicoccus cluster III abundant in industrial activated sludge
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