Microinversions in mammalian evolution

Keywords

Phylogenetic tree, Phylogenetics, Evolutionary biology, Biology, Tree (set theory)

References

• Computational molecular biology : an algorithmic approachPavel A. Pevzner — 2000
• Mammalian phylogenomics comes of age.William J. Murphy, Pavel A. Pevzner, Stephen J. O’Brien — 2004
• Reconstructing large regions of an ancestral mammalian genome in silico.Mathieu Blanchette, Eric D. Green, Webb Miller — 2004
• Orthologous repeats and mammalian phylogenetic inference.Ali Bashir, Chun Ye, Alkes L. Price — 2005
• Mammalian mitogenomic relationships and the root of the eutherian treeÚlfur Árnason, J. A. Adegoke, Kristina Bodin — 2002
• Charged Residues between the Selectivity Filter and S6 Segments Contribute to the Permeation Phenotype of the Sodium ChannelRonald A. Li, Patricio Vélez, Nipavan Chiamvimonvat — 2000
• Comparative analyses of multi-species sequences from targeted genomic regionsJames W. Thomas, Jeff Touchman, Robert W. Blakesley — 2003
• Retroposed Elements as Archives for the Evolutionary History of Placental MammalsJan Ole Kriegs, Gennady Churakov, Martin Kiefmann — 2006
• Genome rearrangements in mammalian evolution: lessons from human and mouse genomes.Pavel A. Pevzner, Glenn Tesler — 2003
• SINEs of the perfect character.David M. Hillis — 1999
• Evaluating placental inter-ordinal phylogenies with novel sequences including RAG1, gamma-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models.Peter J. Waddell, Shawn Shelley — 2003
• Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolutionPavel A. Pevzner, Glenn Tesler — 2003
• Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods.Aurelio Reyes — 2003
• Evidence that eukaryotes and eocyte prokaryotes are immediate relatives.Maria C. Rivera, James A. Lake — 1992
• Repbase Update, a database of eukaryotic repetitive elementsJerzy Jurka, Vladimir V. Kapitonov, Adam Pavlı́ček — 2005
• The complexity of reconstructing trees from qualitative characters and subtreesMichael Steel — 1992
• Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative MapsWilliam J. Murphy, Denis M. Larkin, Annelie Everts-van der Wind — 2005
• Resolution of the Early Placental Mammal Radiation Using Bayesian PhylogeneticsWilliam J. Murphy, Eduardo Eizirik, Stephen J. O’Brien — 2001
• Discovery of Human Inversion Polymorphisms by Comparative Analysis of Human and Chimpanzee DNA Sequence AssembliesLars Feuk, Jeffrey R. MacDonald, Terence Tang — 2005
• Statistical properties of the number of recombination events in the history of a sample of DNA sequences.Richard R. Hudson, Norman Kaplan — 1985

Cited by

• Abundance of ultramicro inversions within local alignments between human and chimpanzee genomesYuichiro Hara, Tadashi Imanishi — 2011
• L'analyse comparée des génomes : applications à l'identification de nouveaux gènes caninsT. Derrien — 2007
• The Path of the Blind Watchmaker: A Model of EvolutionDavid A. Patterson, Andrew Anthony Poggio — 2011
• Chromosomal polymorphism in mammals: an evolutionary perspectiveGauthier Dobigny, Janice Britton‐Davidian, Terence J. Robinson — 2017
• Defining the ancestral eutherian karyotype: A cladistic interpretation of chromosome painting and genome sequence assembly dataTerence J. Robinson, Aurora Ruiz‐Herrera — 2008
• Dynamics of Genome Rearrangement in Bacterial PopulationsAaron E. Darling, István Miklós, Mark A. Ragan — 2008
• Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype DataSuzanne Sindi, Benjamin J. Raphael — 2009
• A recurrent inversion on the eutherian X chromosomeMario Cáceres, Robert T. Sullivan, James W. Thomas — 2007
• Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Data SetsArjun Prasad, Marc W. Allard, NISC Comparative Sequencing Program — 2008
• Cruciform-forming inverted repeats appear to have mediated many of the microinversions that distinguish the human and chimpanzee genomesJessica Kolb, Nadia Chuzhanova, Josef Högel — 2009
• Pico-inplace-inversions between human and chimpanzeeMinmei Hou, Ping Yao, Angela Antonou — 2011
• Split-alignment of genomes finds orthologies more accuratelyMartin C. Frith, Risa Karakida Kawaguchi — 2015
• Error in Phylogenetic Estimation for Bushes in the Tree of LifeSwati Patel — 2013
• Phylogenetic analysis of non-coding plastid DNA in the presence of short inversionsSamuli Lehtonen, Leena Myllys, Sanna Huttunen — 2009
• Homoplastic microinversions and the avian tree of lifeEdward L. Braun, Rebecca T. Kimball, Kin Lan Han — 2011
• Genome analysis of a major urban malaria vector mosquito, Anopheles stephensiXiaofang Jiang, Ashley Peery, A. Brantley Hall — 2014
• Breakpoint graphs and ancestral genome reconstructions.Max A. Alekseyev, Pavel A. Pevzner — 2009
• The infinite sites model of genome evolutionJian Ma, Aakrosh Ratan, Brian J. Raney — 2008
• Estimating true evolutionary distances under the DCJ modelYu Lin, Bernard M. E. Moret — 2008
• Identification of polymorphic inversions from genotypesAlejandro Cáceres, Suzanne Sindi, Benjamin J. Raphael — 2012

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