Interactive metagenomic visualization in a Web browser

Keywords

Metagenomics, Computer science, Plug-in, Visualization, JavaScript

References

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• Phymm and PhymmBL: Metagenomic Phylogenetic Classification with Interpolated Markov ModelsArthur Brady, Steven L. Salzberg — 2009
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• Visual LanguagesShi‐Kuo Chang, Tadao Ichikawa, Panos A. Ligomenides — 2011
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• METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomicsJohannes B. Goll, Douglas B. Rusch, David M. Tanenbaum — 2010

Cited by

• Simulation and identification of gene regulatory networksAndrea Pinna — 2014
• Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828Timothy D. Read, Robert A. Petit, Sandeep J. Joseph — 2017
• The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions龍哲 金 — 2014
• Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies王向梅 — 2016
• Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion IslandQuentin Lenoble — 2017
• Comparison of Rumen and Manure Microbiomes and Implications for the Inoculation of Anaerobic DigestersL. I. Genaeva, L. L. Kashkarov, А. К. Лаврухина — 2018
• CRISPR RNA-dependent binding and cleavage of endogenous RNAs by the Campylobacter jejuni Cas9Miguel Moreno Millán, M. Merlin, Adolfo Rodero Franganillo — 2018
• Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical IsolatesMonica R. Gale — 2018
• Exposure to synthetic hydraulic fracturing waste influences the mucosal bacterial community structure of the brook trout (Salvelinus fontinalis) epidermisH. Galbraith, Deborah D. Iwanowicz, Daniel E. Spooner — 2018
• Structure and Function of Rhizosphere Soil and Root Endophytic Microbial Communities Associated With Root Rot of Panax notoginsengAndrew M. Pitts — 2022
• Reducing assembly complexity of microbial genomes with single-molecule sequencingSergey Koren, Gregory P. Harhay, Timothy P. L. Smith — 2013
• Metagenomic analysis of Mariana Trench sediment samplesVera Carvalho — 2013
• Seasonal Variability in the Diversity of Microbial Assemblages and Antibiotic Resistance Determinants of an Estuary SystemRichard M. Mariita, Jahangir Hossain, Mark R. Liles — 2015
• Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomeSusanne Theuerl, Fabian Kohrs, Dirk Benndorf — 2015
• Electrochemical and microbial monitoring of multi-generational electroactive biofilms formed from mangrove sediment.Caroline Rivalland, Sonia Madhkour, Paule Salvin — 2015
• Environmental shaping of bacterial communities and functional gene diversity in the extreme Transantarctic MountainsJoana Séneca Cardoso da Silva — 2014
• DIVERSIDADE BACTERIANA RUMINAL EM BOVINOS NELORERaphael Barbetta de Jesus — 2014
• Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph AlgorithmsSergey Koren — 2012
• Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated SoilsFranck Stefani, Terrence H. Bell, Charlotte Marchand — 2015
• Illumina-based analysis the microbial diversity associated with Thalassia hemprichii in Xincun Bay, South China SeaYufeng Jiang, Juan Ling, Jun-De Dong — 2015

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