AdapterRemoval v2: rapid adapter trimming, identification, and read merging
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Summary
It is shown that AdapterRemoval v2 compares favorably with existing tools, while offering superior throughput to most alternatives examined here, both for single and multi-threaded operations.
- Type
- article
- Published
- 2016-02-12
- Cited by
- 1,944
- References
- 18
- Access
- Open access
- OpenAlex
- https://openalex.org/W2263582186
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:10520492
Keywords
Adapter (computing), Trimming, Computer science, Multiplexing, Throughput
References
- Analysis of high-throughput ancient DNA sequencing data.
- PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm
- AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.
- Kraken: A set of tools for quality control and analysis of high-throughput sequence data
- Cutadapt removes adapter sequences from high-throughput sequencing reads
- Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
- Comparison of Sequencing Utility Programs
- Prevention, diagnosis and treatment of high‐throughput sequencing data pathologies
- COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
- pIRS: Profile-based Illumina pair-end reads simulator
- Reconstructing ancient genomes and epigenomes
- FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
- PEAR: a fast and accurate Illumina Paired-End reAd mergeR
- Trimmomatic: a flexible trimmer for Illumina sequence data
- leeHom: adaptor trimming and merging for Illumina sequencing reads
- AdapterRemoval: easy cleaning of next-generation sequencing reads
- FLASH: fast length adjustment of short reads to improve genome assemblies
- Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Cited by
- Molecular resolution to a morphological controversy: The case of North American fossil muskoxen Bootherium and Symbos.
- Ancient DNA
- Novel oligonucleotide primers reveal a high diversity of microbes which drive phosphorous turnover in soil.
- metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high‐throughput sequencing shotgun data
- Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals.
- Experimental conditions improving in‐solution target enrichment for ancient DNA
- Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
- Atropos: specific, sensitive, and speedy trimming of sequencing reads
- Characterizing restriction enzyme‐associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom‐designed RNA probes
- Combining bleach and mild predigestion improves ancient DNA recovery from bones
- The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains
- Making big data smart—how to use metagenomics to understand soil quality
- Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past
- Ancient genomic changes associated with domestication of the horse
- African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana
- The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.
- Mitochondrial DNA analysis of human skeletal remains excavated from the Iwashita Cave and Shimo-motoyama rock shelter sites
- An ‛Aukward’ Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks
- Comprehensive analysis of microorganisms accompanying human archaeological remains
- Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
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