Cutadapt removes adapter sequences from high-throughput sequencing reads
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Summary
The command-line tool cutadapt is developed, which supports 454, Illumina and SOLiD (color space) data, offers two adapter trimming algorithms, and has other useful features.
- Type
- article
- Published
- 2011-05-02
- Cited by
- 31,707
- References
- 8
- Access
- Open access
- OpenAlex
- https://openalex.org/W2036897871
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:84784389
Keywords
Adapter (computing), Computer science, Trimming, Operating system
References
- Algorithms on Strings, Trees, and Sequences - Computer Science and Computational Biology
- Algorithms on strings
- Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
- EMBOSS: the European Molecular Biology Open Software Suite.
- Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete.
- SOAP: short oligonucleotide alignment program
- Algorithms on strings, trees, and sequences
- Fast and accurate short read alignment with Burrows–Wheeler transform
- knowledge-based potentials and structural filters Coarse-grained modeling of large RNA molecules with Material Supplemental
- Theoretical and practical advances in genome halving
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- Mod-seq: high-throughput sequencing for chemical probing of RNA structure
- Genetic Evidence of African Slavery at the Beginning of the Trans-Atlantic Slave Trade
- Improving the genetic representation of rare taxa within complex microbial communities using DNA normalization methods
- Simple and inexpensive ribosome profiling analysis of mRNA translation
- Microbiota and host determinants of behavioural phenotype in maternally separated mice
- Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens
- Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA
- Accumulated common variants in the broader fragile X gene family modulate autistic phenotypes
- The Plastomes of Two Species in the Endoparasite Genus Pilostyles (Apodanthaceae) Each Retain Just Five or Six Possibly Functional Genes
- MicroRNA signatures characterizing caste‐independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
- miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species
- Tumour-associated and non-tumour-associated microbiota in colorectal cancer
- Differences in environmental stress response among yeasts is consistent with species-specific lifestyles
- Back to solitude: Solving the phylogenetic position of the Diazonidae using molecular and developmental characters.
- Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass1[OPEN]
- Whole Genome Sequencing Identifies a Missense Mutation in HES7 Associated with Short Tails in Asian Domestic Cats
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