Comparison of Sequencing Utility Programs
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Summary
Two common tasks associated with HTS are adapter trimming and paired-end joining are addressed and the performance of these tools are compared to similar open-source utilities, both in terms of resource efficiency, and effectiveness.
- Type
- article
- Published
- 2013-01-31
- Cited by
- 1,098
- References
- 13
- Access
- Open access
- OpenAlex
- https://openalex.org/W2094100452
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2439912
Keywords
Computer science, Adapter (computing), Terabyte, Trimming, Data mining
References
- TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
- Error detecting and error correcting codes
- Cutadapt removes adapter sequences from high-throughput sequencing reads
- TagDust—a program to eliminate artifacts from next generation sequencing data
- The Sequence Alignment/Map format and SAMtools
- Some Biological Sequence Metrics
- Sentinel Surveillance of Influenza-Like-Illness in Two Cities of the Tropical Country of Ecuador: 2006–2010
- An overview of the analysis of next generation sequencing data.
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- Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice
- Characterization of Three Small Proteins in Brucella abortus Linked to Fucose Utilization
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