lincRNAs: Genomics, Evolution, and Mechanisms

Keywords

Biology, Genomics, Genome, Computational biology, Vertebrate

References

• PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regionsMichael Lin, Irwin Jungreis, Manolis Kellis — 2010
• Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.Vicente María Escuin y Palop — 2012
• Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptidesMark L. Crowe, Xueqing Wang, Joseph A. Rothnagel — 2006
• Noncoding RNA gene detection using comparative sequence analysisElena Rivas, Sean R. Eddy — 2001
• Long non‐coding RNA gadd7 interacts with TDP‐43 and regulates Cdk6 mRNA decayXuefeng Liu, Dan Li, Weimin Zhang — 2012
• A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domainsJohn N. Hutchinson, Alexander W. Ensminger, Christine Clemson — 2007
• Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development.Eliana M. Coccia, Claudia Cicala, A. Charlesworth — 1992
• LincRNA-p21 suppresses target mRNA translationJe‐Hyun Yoon, Kotb Abdelmohsen, Subramanya Srikantan — 2012
• The non-coding Air RNA is required for silencing autosomal imprinted genesFrank Sleutels, Ronald Zwart, Denise P. Barlow — 2002
• CAGE: cap analysis of gene expressionRimantas Kodzius, Miki Kojima, Hiromi Nishiyori — 2006
• Synthesis in vitro of a seven amino acid peptide encoded in the leader RNA of Rous sarcoma virus.Perry B. Hackett, Robert B. Petersen, Charles H. Hensel — 1986
• Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytesOliver H. Tam, Alexei A. Aravin, Paula Stein — 2008
• Assessing the genomic evidence for conserved transcribed pseudogenes under selectionAmit N. Khachane, Paul M. Harrison — 2009
• MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cellsMargaret S. Ebert, Joel R. Neilson, Phillip A. Sharp — 2007
• The GENCODE pseudogene resourceBaikang Pei, Cristina Sisu, Adam Frankish — 2012
• The non-coding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting Mll1 to chromatinStéphane Bertani, Silvia Sauer, Eugene Bolotin — 2011
• Modular regulatory principles of large non–coding RNAsMitchell Guttman, John L. Rinn — 2012
• Polycomb proteins targeted by a short repeat RNA to the mouse X-chromosomeJing Zhao, Bryan K. Sun, Jennifer A. Erwin — 2008
• A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap EnhancersFrancesca De Santa, Iros Barozzi, Flore Mietton — 2010
• Genomic maps of lincRNA occupancy reveal principles of RNA-chromatin interactionsCi Chu, Kun Qu, Franklin L. Zhong — 2011

Cited by

• Tissue-specific RNA-Seq in Human Evoked Inflammation Identifies Blood and Adipose LincRNA Signatures of Cardio-metabolic DiseasesAnnie Pohlman — 2014
• 7SL RNA represses p53 translation by competing with HuRPeter Huson — 2014
• A novel biomarker Linc00974 interacting with KRT19 promotes proliferation and metastasis in hepatocellular carcinomaPaul L. H Olson — 2014
• Genome-wide profiling of the C. elegans dsRNAomeWilliam L Hilsenhoff — 2015
• The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinomaMárcia Carréra Campos Leal, I Jiménez Pulido — 2015
• Linking RNA biology to lncRNAsSvetlana Melnikova — 2015
• Pervasive lncRNA binding by epigenetic modifying complexes--The challenges ahead.哲也 杉森 — 2016
• Long noncoding RNA LINP1 regulates double strand DNA break repair in triple negative breast cancerChon Tejedor — 2016
• Long noncoding RNAs in prostate cancer: mechanisms and applications大石進, 那須好男 — 2014
• Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAsBudiono Tedjakusuma — 2016
• Delivery of Parasite RNA Transcripts Into Infected Epithelial Cells During Cryptosporidium Infection and Its Potential Impact on Host Gene TranscriptionКибирев Владимир Васильевич — 2016
• Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regionsTheresa A. Schreiber, Brandi S. Niemeier — 2017
• Viral Infection Identifies Micropeptides Differentially Regulated in smORF-Containing lncRNAsДоброквашин Сергей Васильевич, Р. Р. Мустафин, Алмаз Гарифзянович Хакимов — 2017
• CRISPR/Cas9‐mediated mutagenesis of lncRNA1459 alters tomato fruit ripeningZoya G. Proshina — 2018
• A compendium of long non-coding RNAs transcriptional fingerprint in multiple myelomaMartin Sommer — 2018
• Identification of functional miRNA interactions in Malignant Melanoma progressionMatteo Zampini — 2014
• Short Stories on Zebrafish Long Noncoding RNAsShadabul Haque, Kriti Kaushik, Vincent Elvin Leonard — 2014
• Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epitheliumJeong Hoon Joo, Danny Ryu, Qian Peng — 2014
• Antisense oligonucleotide-based therapies for diseases caused by pre-mRNA processing defects.Frank Rigo, Punit P. Seth, C. Frank Bennett — 2014
• Transcriptional and Epigenetic Regulation of Human CD4+ T Helper Lineage SpecificationS. Tripathi — 2014

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