Status of the Microbial Census

Keywords

Phylum, Species richness, Biology, Rarefaction (ecology), GenBank

References

• Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial DiversityPhilip Hugenholtz, Brett M. Goebel, Norman R. Pace — 1998
• Santa Rosalia revisited: Why are there so many species of bacteria?Daniel E. Dykhuizen — 2004
• Nonparametric estimation of the number of classes in a populationAnne Chao — 1984
• Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys.Michelle Sait, Philip Hugenholtz, Peter H. Janssen — 2002
• Crenarchaeota colonize terrestrial plant roots.Holly M. Simon, Jeremy A. Dodsworth, Robert M. Goodman — 2001
• Opinion: the species problem, can we achieve a universal concept?Ramon Rosselló‐Móra — 2003
• Molecular phylogeny of Archaea from soil.Scott B. Bintrim, Timothy J. Donohue, Jo Handelsman — 1997
• Estimating prokaryotic diversity and its limitsThomas P. Curtis, William T. Sloan, Jack W. Scannell — 2002
• A natural species concept for prokaryotes.David M. Ward — 1998
• Genetic diversity in Sargasso Sea bacterioplanktonStephen J. Giovannoni, Theresa B. Britschgi, C.L. Moyer — 1990
• Detection and in situ identification of representatives of a widely distributed new bacterial phylum.Wolfgang Ludwig, Stephan Baüer, Marc Bauer — 1997
• A molecular view of microbial diversity and the biosphere.Norman R. Pace — 1997
• Cultivation of the ubiquitous SAR11 marine bacterioplankton cladeMichael S. Rappé, Stephanie A. Connon, Kevin L. Vergin — 2002
• Phylogenetic structure of the prokaryotic domain: The primary kingdomsCarl R. Woese, George E. Fox — 1977
• Counting the Uncountable: Statistical Approaches to Estimating Microbial DiversityJ.B. Hughes, Jessica J. Hellmann, Taylor H. Ricketts — 2001
• New Perspective on Uncultured Bacterial Phylogenetic Division OP11J. Kirk Harris, Scott T. Kelley, Norman R. Pace — 2004
• Novel Division Level Bacterial Diversity in a Yellowstone Hot SpringPhilip Hugenholtz, Christian Pitulle, Karen L. Hershberger — 1998
• Environmental Genome Shotgun Sequencing of the Sargasso SeaJ. Craig Venter, Karin Remington, John F. Heidelberg — 2004
• Prokaryotes: the unseen majority.William B. Whitman, David C. Coleman, W. J. Wiebe — 1998
• Community structure and metabolism through reconstruction of microbial genomes from the environmentGene W. Tyson, Jarrod Chapman, Philip Hugenholtz — 2004

Cited by

• Changes in soil Acidobacteria communities after 2,4,6-trinitrotoluene contamination.Timothy F. Lawton, Douglas A. Sprinkel, Peter G. DeCelles — 2009
• High-Density 16S Microarray and Clone Library–Based Microbial Community Composition of the Phoenix Spacecraft Assembly Clean RoomShirl Gard — 2010
• Diversity and dynamics of Archaea in an activated sludge wastewater treatment plantHenrike Moll, Andrew N. Meltzoff — 2012
• Terasakiispira papahanaumokuakeensis gen. nov., sp. nov., a gammaproteobacterium from Pearl and Hermes Atoll, Northwestern Hawaiian Islands.Stephen L. Slavin — 2015
• Improving the microbial community reconstruction at the genus level by multiple 16S rRNA regions.Juan Carrillo de Albornoz y Galbeño — 2016
• BIODIVERSITY OF RARE THERMOPHILIC ACTINOMYCETES IN THE GREAT INDIAN THAR DESERT: AN OVERVIEWDharmesh Harwani — 2013
• Exploring the ecology and genomics of globally important nitrite-oxidizing bacteriaSebastian Lücker — 2010
• Community structure and distribution of functional microbial groups within two complex environmentsDoris Steger — 2010
• Antibiotika als Umweltkontaminanten — Effekte auf BodenbakterienHeike Schmitt, Bennie Martinali, Krispin Stoob — 2006
• Molekularbiologische Untersuchungen zur Biodiversität heterotropher FlagellatenFrank Scheckenbach — 2005
• Influence de la présence et de la composition du microbiote intestinal sur le développement et la prévention des allergies alimentairesS. Morin — 2012
• Caractérisation des communautés procaryotiques impliquées dans la bioremédiation d'un sol pollué par des hydrocarbures et développement d'outils d'analyse à haut débit : les biopuces ADNCécile Militon — 2007
• Taxonomic classification of metagenomic sequencesWolfgang Gerlach — 2012
• Characterization and Investigation of Fungi Inhabiting the Gastrointestinal Tract of Healthy and Diseased HumansMallory J. Van Haute — 2015
• Environmental shaping of bacterial communities and functional gene diversity in the extreme Transantarctic MountainsJoana Séneca Cardoso da Silva — 2014
• Computational characterization of prokaryotic genomic islandsW. Hsiao — 2007
• Evaluation of a New Method for Large-Scale and Gene-targeted Next Generation DNA Sequencing in Nonmodel SpeciesTed Cosart — 2013
• Biosystematics of the genus Dactylosporangium and some other filamentous actinomycetesByung‐Yong Kim — 2010
• Generating bioinformatic resources for L1-dependent retrotransposonsJohn F. Wagstaff — 2014
• Benzene Biodegradation In Coal-Tar Contaminated Groundwater: Documenting The Role Of Variovorax Mak3Kevin M. Posman — 2013

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