Environmental Genome Shotgun Sequencing of the Sargasso Sea
Explore this paper's citation graph
Summary
Over 1.2 million previously unknown genes represented in these samples, including more than 782 new rhodopsin-like photoreceptors are identified, suggesting substantial oceanic microbial diversity.
- Type
- article
- Published
- 2004-04-02
- Cited by
- 4,354
- References
- 60
- OpenAlex
- https://openalex.org/W2113601822
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:1454587
Keywords
Shotgun sequencing, Biology, Sargasso sea, Metagenomics, Genome
References
- Coupling Between Rates of Bacterial Production and the Abundance of Metabolically Active Bacteria in Lakes, Enumerated Using CTC Reduction and Flow Cytometry
- IL-13受体α2降低血吸虫病肉芽肿的炎症反应并延长宿主存活时间[英]/Mentink-Kane MM,Cheever AW，Thompson RW，et al//Proc Natl Acad Sci U S A
- Use of nuclepore filters for counting bacteria by fluorescence microscopy
- Nonparametric estimation of the number of classes in a population
- A whole-genome assembly of Drosophila.
- Pathology of melioidosis in captive marine mammals.
- A new marine picoeucaryote: Ostreococcus tauri gen. et sp. nov. (Chlorophyta, Prasinophyceae)
- Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistry
- Photoinhibition of marine nitrifying bacteria. II. Dark recovery after monochromatic or polychromatic irradiation
- Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis
- Viral mortality of marine bacteria and cyanobacteria
- Estimating prokaryotic diversity and its limits
- Can Microscale Chemical Patches Persist in the Sea? Microelectrode Study of Marine Snow, Fecal Pellets
- Biological Oceanographic Processes
- The genome of a motile marine Synechococcus
- Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
- rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria
- Photoinhibition of marine nitrifying bacteria. I. Wavelength-dependent response
- BOLIDOMONAS: A NEW GENUS WITH TWO SPECIES BELONGING TO A NEW ALGAL CLASS, THE BOLIDOPHYCEAE (HETEROKONTA)
- Proteorhodopsin phototrophy in the ocean
Cited by
- 細菌群集の時空間分布と物質循環をつなぐ : 細菌とメタ群集理論 ( ミクロな世界からの新展開)
- Diversity of the Ohio River Bacterial Communities Using Next-generation Sequencing Techniques
- The Isolation and Characterization of the Microbial Flora in the Alimentary Canal of Gromphadorhina portentosa Based on rDNA Sequences.
- Large-scale methods in computational genomics
- Conservation of adjacency as evidence of paralogous operons.
- Genomic perspectives in microbial oceanography
- Proteorhodopsin in the ubiquitous marine bacterium SAR11
- In-depth analyses of marine microbial community genomics.
- Clonal Adaptive Radiation in a Constant Environment
- Culture Isolation and Culture-Independent Clone Libraries Reveal New Marine Synechococcus Ecotypes with Distinctive Light and N Physiologies
- Biodegradation of the cyclic nitramine explosives RDX, HMX, and CL-20
- Identification of a large noncoding RNA in extremophilic eubacteria
- Species detection using environmental DNA from water samples
- Isolation of monoclonal microcarriers colonized by fluorescent E. coli
- Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets
- Innovative technology for cancer risk analysis.
- Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils
- Massively parallel sequencing technology in pathogenic microbes.
- Ways to mix multiple PCR amplicons into single 454 run for DNA barcoding.
- Microbiology: The life beneath our feet
Related papers
- Shotgun metagenomic data on the human stool samples to characterize shifts of the gut microbial profile after the Helicobacter pylori eradication therapy
- Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass and reference genome properties
- Recovering metagenome-assembled genomes from shotgun metagenomic sequencing data: Methods, applications, challenges, and opportunities.
- Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics
- Recovering Individual Genomes from Metagenomes Using MaxBin 2.0
- Autometa: automated extraction of microbial genomes from individual shotgun metagenomes
- Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
- Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
- Sensitivity of shotgun metagenomics to host DNA: abundance estimates depend on bioinformatic tools and contamination is the main issue
- Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome-assembled genomes from a complex aquifer system.