Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity

Keywords

Biology, Diversity (politics), Phylogenetic diversity, Phylogenetic tree, Evolutionary biology

References

• A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sedimentRichard Devereux, Gary Mundfrom — 1994
• Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysisJean‐Jacques Godon, Emmanuelle Zumstein, P. Dabert — 1997
• Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regionsCheryl R. Kuske, Susan M. Barns, Joseph D. Busch — 1997
• Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial matRoland Weller, Mary M. Bateson, B.K. Heimbuch — 1992
• Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganismsE D Kopczynski, Mary M. Bateson, David M. Ward — 1994
• Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National ParkAnna‐Louise Reysenbach, Gene S. Wickham, Norman R. Pace — 1994
• Microbial Diversity in a Hydrocarbon- and Chlorinated-Solvent-Contaminated Aquifer Undergoing Intrinsic BioremediationMichael A. Dojka, Philip Hugenholtz, Sheridan K. Haack — 1998
• Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceansDouglas A. Gordon, Stephen J. Giovannoni — 1996
• 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNARoland Weller, Juliane Weller, David M. Ward — 1991
• Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain BacteriaNaomi Ward-Rainey, Frederick A. Rainey, Heinz Schlesner — 1995
• The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees - Intrafamily relationships and the phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequencesWerner Liesack, Rainer Söller, Trina Stewart — 1992
• Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops".Carl R. Woese, S. Winker, Robin R. Gutell — 1990
• Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatum.Akira Hiraishi, Noriaki Kishimoto, Yoshimasa Kosako — 1995
• The RDP (Ribosomal Database Project)B. Maidak, G. J. Olsen, N. Larsen — 1997
• Proteobacteria classis nov., a Name for the Phylogenetic Taxon That Includes the “Purple Bacteria and Their Relatives”Erko Stackebrandt, R. G. E. Murray, Hans G. Trüper — 1988
• 16S rRNA sequences reveal numerous uncultured microorganisms in a natural communityDavid M. Ward, Roland Weller, Mary M. Bateson — 1990
• Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences.Susan M. Barns, Charles F. Delwiche, J D Palmer — 1996
• Detection and in situ identification of representatives of a widely distributed new bacterial phylum.Wolfgang Ludwig, Stephan Baüer, Marc Bauer — 1997
• Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone librariesDarrell P. Chandler, J. K. Fredrickson, Fred J. Brockman — 1997
• A molecular view of microbial diversity and the biosphere.Norman R. Pace — 1997

Cited by

• Diversity of the Ohio River Bacterial Communities Using Next-generation Sequencing TechniquesEmily M. Anneken — 2012
• Detection of Verrucomicrobia in a Pasture Soil by PCR-Mediated Amplification of 16S rRNA GenesEdgar Nelson Transeau — 1999
• The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.Emma Laura Alfaro Gómez, María Ester Albeck — 1999
• Termite gut flagellates and their bacterial symbionts: Phylogenetic analysis and localization in situUlrich Stingl — 2004
• The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathwaysYu. N. Demkov, V. N. Ostrovskiǐ, Е. А. Соловьев — 2000
• Characterisation of the microbial 16S rDNA diversity of an aerobic phosphorus-removal ecosystem and monitoring of its transition to nitrate respirationGema Álvarez Salcedo — 2001
• Bacterial Distribution and Phylogenetic Diversity in the Changjiang Estuary before the Construction of the Three Gorges DamHiroyuki Sekiguchi, Hiroshi Koshikawa, Mikiya Hiroki — 2002
• The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil.Irén Mikó, Anita Bálint, Ilona Benkő — 2003
• Bacterial diversity of the Inner Mongolian Baer Soda Lake as revealed by 16S rRNA gene sequence analyses渉 砂押 — 2004
• Bacterial community profiles on feathers during composting as determined by terminal restriction fragment length polymorphism analysis of 16S rDNA genesL. Testi — 2005
• Epilithic biofilms in Saint Callixtus Catacombs (Rome) harbour a broad spectrum of AcidobacteriaJoaquín Bosque Maurel — 2006
• Screening for new metabolites from marine microorganisms.Philippe Tartera — 2005
• Bacterial community structure and activity in fish farm sediments of the Ligurian sea (Western Mediterranean)Luigi Vezzulli, Elisabetta Chelossi, Giovanna Riccardi — 2002
• Acidobacteria Phylum Sequences in Uranium-Contaminated Subsurface Sediments Greatly Expand the Known Diversity within the PhylumA. Sahoo, Gabriëlle De Lannoy, Rolf H. Reichle — 2007
• Diversity of Gut Bacteria of Reticulitermes flavipes as Examined by 16S rRNA Gene Sequencing and Amplified rDNA Restriction AnalysisJean-Marie Gomez — 2007
• Filamentous Scum Bacteria in Activated Sludge Plants: Detection and Identification Quality by Conventional Activated Sludge Microscopy versus Fluorescence In Situ HybridizationElisabeth Müller, Margit Schade, Hilde Lemmer — 2007
• Molecular phylogenetic diversity of bacteria and its spatial distribution in compostsRamón F. Reboiras — 2007
• Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cellElizabeth Taylor — 2008
• Bacterial diversity of Taxus rhizosphere: culture-independent and culture-dependent approaches.Dieter Masak — 2008
• Changes in soil Acidobacteria communities after 2,4,6-trinitrotoluene contamination.Timothy F. Lawton, Douglas A. Sprinkel, Peter G. DeCelles — 2009

Related papers

• Phylogenetic identification and in situ detection of individual microbial cells without cultivation.Rudolf Amann, Wolfgang Ludwig, Karl‐Heinz Schleifer — 1995
• Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNAGerard Muyzer, Ellen C. de Waal, André G. Uitterlinden — 1993
• The uncultured microbial majority.Michael S. Rappé, Stephen J. Giovannoni — 2003
• Prokaryotes: the unseen majority.William B. Whitman, David C. Coleman, W. J. Wiebe — 1998
• Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA GenesPeter H. Janssen — 2006
• A molecular view of microbial diversity and the biosphere.Norman R. Pace — 1997
• Genetic diversity in Sargasso Sea bacterioplanktonStephen J. Giovannoni, Theresa B. Britschgi, C.L. Moyer — 1990
• Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial TaxonomyQiong Wang, George M Garrity, James M. Tiedje — 2007
• Comparative Metagenomics of Microbial CommunitiesSusannah G. Tringe, Christian von Mering, Arthur Kobayashi — 2004