PHAST: A Fast Phage Search Tool
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Summary
PHAge Search Tool (PHAST) is a web server designed to rapidly and accurately identify, annotate and graphically display prophage sequences within bacterial genomes or plasmids.
- Type
- article
- Published
- 2011-06-14
- Cited by
- 1,987
- References
- 20
- Access
- Open access
- OpenAlex
- https://openalex.org/W2100363512
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:10018036
Keywords
Prophage, GenBank, Biology, Genome, Genetics
References
- Prophage Finder: A Prophage Loci Prediction Tool for Prokaryotic Genome Sequences
- Prophages and bacterial genomics: what have we learned so far?
- Global phage diversity.
- Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies.
- ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.
- Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
- Microbial gene identification using interpolated Markov models.
- Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.
- Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference
- Killing cancer cells by targeted drug-carrying phage nanomedicines
- Prophinder: a computational tool for prophage prediction in prokaryotic genomes
- tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
- Novel approaches to developing new antibiotics for bacterial infections
- Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models.
- A Density-Based Algorithm for Discovering Clusters in Large Spatial Databases with Noise
- A density-based algorithm for discovering clusters in large spatial Databases with Noise
- Database and Comparative Identification of Prophages
Cited by
- A Comparison of Shiga-Toxin 2 Bacteriophage from Classical Enterohemorrhagic Escherichia coli Serotypes and the German E. coli O104:H4 Outbreak Strain
- Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm
- Draft Genome Sequence of Coprobacter fastidiosus NSB1T
- First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak
- Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium
- Disease-specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment
- Draft Genome Sequence of Aquamicrobium defluvii Strain W13Z1, a Psychrotolerant Halotolerant Hydrocarbon-Degrading Bacterium
- Draft Genome Sequence of a Clinical Isolate of Serratia marcescens, Strain AH0650_Sm1
- Genome Sequence of Enterococcus pernyi, a Pathogenic Bacterium for the Chinese Oak Silkworm, Antheraea pernyi
- The First Siphoviridae Family Bacteriophages Infecting Bordetella bronchiseptica Isolated from Environment
- Genome-directed analysis of prophage excision, host defence systems, and central fermentative metabolism in Clostridium pasteurianum
- Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens.
- Complete Genome Sequence of Staphylococcus carnosus LTH 3730
- Genome Dynamics of Escherichia coli during Antibiotic Treatment: Transfer, Loss, and Persistence of Genetic Elements In situ of the Infant Gut
- A Primer on Infectious Disease Bacterial Genomics
- Genome Editing of Food-Grade Lactobacilli To Develop Therapeutic Probiotics
- Isolation in small populations of Wayampi Amerindians promotes endemicity and homogenisation of their faecal virome, but its distribution is not entirely random
- Draft Genome Sequence of Aeromonas cavernicola sp. nov. DSM 24474T, Isolated from a Cavern Brook in the Moravia Region of the Czech Republic
- Identification of large cryptic plasmids in Clostridioides (Clostridium) difficile.
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