Microbial gene identification using interpolated Markov models.
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Summary
A new system, GLIMMER, is described, which is more flexible and more powerful than fixed-order Markov methods, which have previously been the primary content-based technique for finding genes in microbial DNA.
- Type
- article
- Published
- 1998-01-01
- Cited by
- 1,091
- References
- 20
- Access
- Open access
- OpenAlex
- https://openalex.org/W2032870665
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2970682
Keywords
Biology, Markov chain, Context (archaeology), Genome, Computational biology
References
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- A universal data compression system
- Microbial pathogenesis: genomics and beyond.
- The complete genome sequence of the gastric pathogen Helicobacter pylori
- Nonuniform Markov models
- Detection of new genes in a bacterial genome using Markov models for three gene classes.
- Basic Local Alignment Search Tool
- Local order estimating Markovian analysis for noiseless source coding and authorship identification
- IEEE Transactions on Information Theory
Cited by
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- The genome of Treponema pallidum: new light on the agent of syphilis.
- Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.
- Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models.
- Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157.
- Seven GC-rich microbial genomes adopt similar codon usage patterns regardless of their phylogenetic lineages.
- GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders
- Classification of short human exons and introns based on statistical features.
- Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a
- At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1
- Draft Genome Sequences of Vancomycin-Susceptible Staphylococcus aureus Related to Heterogeneous Vancomycin-Intermediate S. aureus
- Genome Sequence of a Urease-Positive Campylobacter lari Strain
- The Isolation and Characterization of TiroTheta9, a Novel A4 Mycobacterium Phage
- Etude de la diversité génétique de l'espèce Campylobacter jejuni par l'utilisation de puces à ADN
- Bacterial genome annotation.
- The spatial and temporal regulatory code of transcription initiation in Drosophila melanogaster
- Bioinformatics-Assisted Microbiological Research: Tasks, Developments and Upcoming Challenges
- Classification d'ARN codants et d'ARN non-codants
- Supervised DAG Based Data Mining Model for DNA Sequence Analysis and Pattern Discovery
- Genomics for applied microbiology.
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