Mosaic structure of Mycobacterium bovis BCG genomes as a representation of phage sequences’ mobility

Keywords

Prophage, Genome, Biology, ORFS, Genetics

References

• Importance of prophages to evolution and virulence of bacterial pathogensKonstantin Sergueevich Stanislavskiï, Jorge Saura — 2013
• History of BCG Vaccine.Simona De Luca, T Mihăescu — 2013
• Preparation of Genomic DNA from BacteriaKate J. Wilson — 2001
• Phylogenetic classification of proteins encoded in complete genomesTodd Richmond — 2000
• Prophages and bacterial genomics: what have we learned so far?Sherwood Casjens — 2003
• The RAST Server: Rapid Annotations using Subsystems TechnologyRamy K. Aziz, Daniela Bartels, Aaron A. Best — 2008
• Development of the Mycobacterium bovis BCG vaccine: review of the historical and biochemical evidence for a genealogical tree.T Oettinger, Morten Buus Jørgensen, A. Ladefoged — 1999
• Preparation of mycobacterial antigens fused with a cellulose-binding domain with the aim of developing a subunit antituberculous vaccineО. В. Сергиенко, Ekaterina I. Aksenova, A. M. Lyashchuk — 2012
• Genome plasticity of BCG and impact on vaccine efficacyRoland Brosch, Stephen V. Gordon, Thierry Garnier — 2007
• Whole genome sequence analysis of Mycobacterium bovis bacillus Calmette-Guérin (BCG) Tokyo 172: a comparative study of BCG vaccine substrains.Masaaki Seki, Ikuro Honda, Isao Fujita — 2009
• Phages and the Evolution of Bacterial Pathogens: from Genomic Rearrangements to Lysogenic ConversionHarald Brüssow, Carlos Canchaya, Wolf‐Dietrich Hardt — 2004
• Genomic Analysis of a Mycobacterium Bovis Bacillus Calmette-Guérin Strain Isolated from an Adult Patient with Pulmonary TuberculosisXuming Li, Liping Chen, Yongqiang Zhu — 2015
• BCG vaccine in KoreaSun Myung Joung, Sungweon Ryoo — 2013
• SignalP 4.0: discriminating signal peptides from transmembrane regionsThomas Nordahl Petersen, Søren Brunak, Gunnar von Heijne — 2011
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.Naruya Saitou, M Nei — 1987
• PHAST: A Fast Phage Search ToolYou Zhou, Yong Liang, Karlene H. Lynch — 2011
• InterProScan 5: genome-scale protein function classificationPhilip Jones, David Binns, Hsin-Yu Chang — 2014
• Genome Sequencing and Analysis of BCG Vaccine StrainsWen Zhang, Yuanyuan Zhang, Huajun Zheng — 2013
• The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 GenomesRoss Overbeek — 2005
• CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeatsIbtissem Grissa, Gilles Vergnaud, Christine Pourcel — 2007

Cited by

• Computational genomics at BGRS-2016: introductory noteYuriy L. Orlov, Ancha Baranova, Ralf Hofestädt — 2016
• Bacillus Calmette-Guérin (BCG) vaccine: A global assessment of demand and supply balanceTania Cernuschi, Stefano Malvolti, Emily Nickels — 2018
• Reference genome and comparative genome analysis for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccineKatlyn Borgers, Jheng-Yang Ou, Po‐Xing Zheng — 2019
• First insight into the whole-genome sequence variations in Mycobacterium bovis BCG-1 (Russia) vaccine seed lots and their progeny clinical isolates from children with BCG-induced adverse eventsOlga Narvskaya, Daria Starkova, Diana Levi — 2020
• Complete Genome Sequence, Genome Stability and Phylogeny of the Vaccine Strain Mycobacterium bovis BCG SL222 SofiaStefan Panaiotov, Yordan Hodzhev, Vladimir Tolchkov — 2021
• Сравнительный анализ полногеномных последовательностей посевной серии вакцинного штамма Mycobacterium bovis BCG-1 (Russia) и дочерних изолятов, полученных от детей с БЦЖ-оститамиOlga Narvskaya, Anna Vyazovaya, Viacheslav Zhuravlev — 2021
• Genomic evidence for stability of the Bacillus Calmette‐Guérin (BCG) vaccine strain (Pasteur 1173P2) from different batches in IranMahla Asadian, Azadeh Safarchi, Seyed Mehdi Hassanzadeh — 2021
• The whole genome sequence of Polish vaccine strain Mycobacterium bovis BCG MoreauKatarzyna Krysztopa-Grzybowska, Jakub Lach, Maciej Polak — 2024

Related papers

• Evolutional insights on uncharacterized SARS coronavirus genesAlex Inberg, Michal Linial — 2004
• Systematic disruption of 456 ORFs in the yeast Saccharomyces cerevisiaeAnca Lucau‐Danila, Robert Wysocki, Tiziana Roganti — 2000
• Induction of Multiple Prophages from a Marine Bacterium: a Genomic ApproachFeng Chen, Kui Wang, Jeneen Stewart — 2006
• Exploring the prophage biology of Salmonella enterica serovar Typhimurium ST313SV Owen — 2017
• Fitness benefits to bacteria of carrying prophages and prophage‐encoded antibiotic‐resistance genes peak in different environmentsCarolin C. Wendling, Dominik Refardt, Alex Hall — 2020
• Distribution of prophages and SGI-1 antibiotic-resistance genes among different Salmonella enterica serovar Typhimurium isolates.A.P.H.M. Hermans, Annelien M. Beuling, Angela H. A. M. van Hoek — 2006
• First Whole-Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium bovis BCGAurélie Renvoisé, Stanley Pang, Christine Bernard — 2014
• Complete Genome Sequence of Mycobacterium bovis Strain BCG-1 (Russia)Е.А. Сотникова, Egor Shitikov, Maja V. Malakhova — 2016
• Comparative genomics and phylogenetic analysis of S. dysenteriae subgroupEnzhuo Yang — 2005
• Complete genome sequence of a novel species of Brevundimonas (strain NIBR10)Myeong-Hyeon Min, Dong-Hyun Jung, Jin Nam Kim — 2023