Species-specific alternative splicing leads to unique expression of sno-lncRNAs
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Summary
Comparative transcriptomes of non-polyadenylated RNAs among human, rhesus and mouse revealed that the expression of sno-lncRNAs is species-specific and that their processing is closely linked to alternative splicing of their parent genes.
- Type
- article
- Published
- 2014-04-16
- Cited by
- 53
- References
- 42
- Access
- Open access
- OpenAlex
- https://openalex.org/W2066502840
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:16868952
Keywords
Biology, Small nucleolar RNA, Polyadenylation, Alternative splicing, RNA splicing
References
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- Deletion of the MBII-85 snoRNA Gene Cluster in Mice Results in Postnatal Growth Retardation
- Paternally inherited microdeletion at 15q11.2 confirms a significant role for the SNORD116 C/D box snoRNA cluster in Prader–Willi syndrome
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
- Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
- Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster
- VISTA: computational tools for comparative genomics
- SnoRNA Snord116 (Pwcr1/MBII-85) Deletion Causes Growth Deficiency and Hyperphagia in Mice
- The Reality of Pervasive Transcription
- MicroRNA profiling of rhesus macaque embryonic stem cells
- Circular intronic long noncoding RNAs.
- Biogenesis of small nucleolar ribonucleoproteins.
- Shining a light on the genome's 'dark matter'.
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- Long noncoding RNAs with snoRNA ends.
- lncRNAdb: a reference database for long noncoding RNAs
- Panning for Long Noncoding RNAs
- A deletion of the HBII-85 class of small nucleolar RNAs (snoRNAs) is associated with hyperphagia, obesity and hypogonadism.
- The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A.
Cited by
- Complementary sequence-mediated exon circularization.
- Basic Biology and Therapeutic Implications of lncRNA
- Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
- The emerging landscape of small nucleolar RNAs in cell biology
- Unusual Novel SnoRNA-Like RNAs in Drosophila melanogaster
- Splicing noncoding RNAs from the inside out
- Neighboring Gene Regulation by Antisense Long Non-Coding RNAs
- Gene expression profiling of non-polyadenylated RNA-seq across species
- GASS: genome structural annotation for Eukaryotes based on species similarity
- Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes
- Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity
- The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury.
- An updated human snoRNAome
- Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing
- The Working Modules of Long Noncoding RNAs in Cancer Cells.
- Linking Long Noncoding RNA Localization and Function.
- The Long Noncoding RNA Landscape in Hypoxic and Inflammatory
- The effects of Caralluma Fimbriata on appetite behaviour and associated neural pathways in Prader-Willi syndrome
- Identification and analysis of intermediate-size noncoding RNAs in the rhesus macaque fetal brain.
- Box C/D small nucleolar RNA genes and the Prader‐Willi syndrome: a complex interplay
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