A Novel Dynamic Impact Approach (DIA) for Functional Analysis of Time-Course Omics Studies: Validation Using the Bovine Mammary Transcriptome
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Summary
The Dynamic Impact Approach (DIA) provides an estimate of the biological impact of the experimental conditions and the direction of the impact of genes associated with the biological term and indicates the DIA is a biologically-sound approach for analysis of time-course experiments.
- Type
- article
- Published
- 2012-03-16
- Cited by
- 100
- References
- 46
- Access
- Open access
- OpenAlex
- https://openalex.org/W2022179977
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:13053445
Keywords
KEGG, Transcriptome, Gene ontology, Biology, Microarray analysis techniques
References
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- Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition.
- Quantitative trait loci affecting milk production traits in Finnish Ayrshire dairy cattle.
Cited by
- Maternal Plane of Nutrition during Late Gestation and Weaning Age Alter Angus × Simmental Offspring Longissimus Muscle Transcriptome and Intramuscular Fat
- The effect of calving in the summer on the hepatic transcriptome of Holstein cows during the peripartal period.
- Effects of the DGAT1 polymorphism on test-day milk production traits throughout lactation.
- PTN Signaling: Components and Mechanistic Insights in Human Ovarian Cancer
- A quantitative trait locus on Bos taurus autosome 17 explains a large proportion of the genetic variation in de novo synthesized milk fatty acids.
- Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation
- DIGE based proteome analysis of mammary gland tissue in water buffalo (Bubalus bubalis): lactating vis-a-vis heifer.
- KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model.
- PPARγ Regulates Genes Involved in Triacylglycerol Synthesis and Secretion in Mammary Gland Epithelial Cells of Dairy Goats
- Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level
- Functional Role of PPARs in Ruminants: Potential Targets for Fine-Tuning Metabolism during Growth and Lactation
- Functional Adaptations of the Transcriptome to Mastitis-Causing Pathogens: The Mammary Gland and Beyond
- Integrative Analyses of Hepatic Differentially Expressed Genes and Blood Biomarkers during the Peripartal Period between Dairy Cows Overfed or Restricted-Fed Energy Prepartum
- Trans-10, cis 12-Conjugated Linoleic Acid-Induced Milk Fat Depression Is Associated with Inhibition of PPARγ Signaling and Inflammation in Murine Mammary Tissue
- Gut response induced by weaning in piglet features marked changes in immune and inflammatory response
- Microfluidic high-throughput reverse-transcription quantitative PCR analysis of liver gene expression in lactating animals
- Bioinformatics Analysis of Transcriptome Dynamics During Growth in Angus Cattle Longissimus Muscle
- Functional welfare-using biochemical and molecular technologies to understand better the welfare state of peripartal dairy cattle
- iTRAQ-proteomics and bioinformatics analyses of mammary tissue from cows with clinical mastitis due to natural infection with Staphylococci aureus
- Feed restriction, but not l-carnitine infusion, alters the liver transcriptome by inhibiting sterol synthesis and mitochondrial oxidative phosphorylation and increasing gluconeogenesis in mid-lactation dairy cows.
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