KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model.
Explore this paper's citation graph
Summary
A path analysis model (KEGG-PATH) is developed to subdivide the total effect of each K EGG pathway into the direct effect and indirect effect by taking into account not only each KEGG pathway itself, but also the correlation with its related pathways.
- Type
- article
- Published
- 2014-07-30
- Cited by
- 365
- References
- 19
- OpenAlex
- https://openalex.org/W1987520879
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:16507658
Keywords
KEGG, Encyclopedia, Computational biology, Genome, Biology
References
- Ultrastructure of the mammary secretory cell.
- Tight Junction Regulation in the Mammary Gland
- Lactation persistency: insights from mammary cell proliferation studies.
- Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle
- On mammary stem cells
- Functional Development of the Mammary Gland: Use of Expression Profiling and Trajectory Clustering to Reveal Changes in Gene Expression During Pregnancy, Lactation, and Involution
- Notch Signaling in Mammary Development and Oncogenesis
- A Novel Dynamic Impact Approach (DIA) for Functional Analysis of Time-Course Omics Studies: Validation Using the Bovine Mammary Transcriptome
- Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferation
- Mammary cell number, proliferation, and apoptosis during a bovine lactation: relation to milk production and effect of bST.
- Bovine milk glycome.
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach
- Cellular mechanisms in regulating mammary cell turnover during lactation and dry period in dairy cows.
- A systems biology approach for pathway level analysis.
- Gene Networks Driving Bovine Mammary Protein Synthesis during the Lactation cycle
- Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression
- Bioinformatics and Biology Insights Gene Networks Driving Bovine Mammary Protein Synthesis during the Lactation Cycle
Cited by
- Network-based approaches for drug response prediction and targeted therapy development in cancer.
- Elucidation of the growth delimitation of Dunaliella tertiolecta under nitrogen stress by integrating transcriptome and peptidome analysis.
- Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies
- Integrated in silico and experimental methods revealed that Arctigenin inhibited angiogenesis and HCT116 cell migration and invasion through regulating the H1F4A and Wnt/β-catenin pathway.
- BRENDA in 2015: exciting developments in its 25th year of existence
- Human cancer databases (Review)
- Comprehensive Analysis of Glycolytic Enzymes as Therapeutic Targets in the Treatment of Glioblastoma
- Genome Sequence of Sphingobium yanoikuyae B1, a Polycyclic Aromatic Hydrocarbon-Degrading Strain
- A Comprehensive Immunoreceptor Phosphotyrosine-based Signaling Network Revealed by Reciprocal Protein–Peptide Array Screening*
- Advanced Applications of RNA Sequencing and Challenges
- Dynamic software design for clinical exome and genome analyses: insights from bioinformaticians, clinical geneticists, and genetic counselors
- Integration of a Decrescent Transcriptome and Metabolomics Dataset of Peucedanum praeruptorum to Investigate the CYP450 and MDR Genes Involved in Coumarins Biosynthesis and Transport
- Cantharidin represses invasion of pancreatic cancer cells through accelerated degradation of MMP2 mRNA
- GeneWeaver: data driven alignment of cross-species genomics in biology and disease
- The long non-coding RNA expression profile of Coxsackievirus A16 infected RD cells identified by RNA-seq
- De novo transcriptome analysis reveals tissue-specific differences in gene expression in Salix arbutifolia
- Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database.
- Featured Article: Genotation: Actionable knowledge for the scientific reader
- A novel skew analysis reveals substitution asymmetries linked to genetic code GC-biases and PolIII a-subunit isoforms
- Identification of driver pathways in cancer based on combinatorial patterns of somatic gene mutations.
Related papers
- Liver Transcriptome Analysis of the Large Yellow Croaker (Larimichthys crocea) during Fasting by Using RNA-Seq
- A Transcriptomic and Proteomic Analysis of the Diaphorina citri Salivary Glands Reveals Genes Responding to Candidatus Liberibacter asiaticus
- Gene expression analysis reveals the dysregulation of immune and metabolic pathways in Alzheimer's disease
- Identification of relevant subpathways from molecular pathways in gene expression data by a probabilistic approach
- Identification of potential biomarkers and inhibitors in SARS-CoV-2 infected macaques
- Identification of gene ontology and pathways implicated in suicide behavior: Systematic review and enrichment analysis of GWAS studies
- PriPath: Identifying Dysregulated Pathways from Differential Gene Expression via Grouping, Scoring and Modeling with an Embedded Machine Learning Approach
- PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach
- Identification of estrogen-associated intrinsic aging genes in Chinese Han female skin by cDNA microarray technology.
- Identification of potential biomarkers and inhibitors for SARS-CoV-2 infection