Amino Acid Substitution Matrices from an Artificial Neural Network Model

Keywords

Substitution (logic), Artificial neural network, Amino acid substitution, Distance matrix, Matrix (chemical analysis)

References

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Cited by

• A Collection of Amino Acid Replacement Matrices Derived from Clusters of Orthologs正志 花井 — 2005
• Protein fold recognition using neural networks.K. Lin — 2003
• Advanced stochastic protein sequence analysis (Neue Ansätze zur Analyse von Proteinsequenzen mit Hidden-Markov-Modellen)Thomas Plötz — 2005
• Ideal amino acid exchange forms for approximating substitution matricesPiotr Pokarowski, Andrzej Kloczkowski, Szymon Nowakowski — 2007
• Statistical Evaluation of Local Alignment Features Predicting Allergenicity Using Supervised Classification AlgorithmsDaniel Soeria‐Atmadja, Anna Zorzet, Mats G. Gustafsson — 2004
• Amino acid encoding schemes from protein structure alignments: multi-dimensional vectors to describe residue types.Kuang Lin, Alex C.W. May, William R. Taylor — 2002
• Detailed assessment of homology detection using different substitution matricesJing Li, Wei Wang — 2006
• A revised description of Gyrodactylus cichlidarum Paperna, 1968 (Gyrodactylidae) from the Nile tilapia, Oreochromis niloticus niloticus (Cichlidae), and its synonymy with G. niloticus Cone, Arthur et Bondad-Reantaso, 1995.Adriana García‐Vásquez, Haakon Hansen, Andrew P. Shinn — 2007
• Threading Using Neural nEtwork (TUNE): the measure of protein sequence-structure compatibilityKuang Lin, Alex C.W. May, William R. Taylor — 2002
• Mathematical models for studying the properties of the genetic codeIvan Trenchev, Metody Traykov, Miglena Trencheva — 2017
• Loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structureLukas Gerasimavicius, Benjamin Livesey, Joseph A. Marsh — 2021
• Loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structure: implications for variant effect predictionLukas Gerasimavicius, Benjamin Livesey, Joseph A. Marsh — 2021
• A Methodology for Determining Amino-Acid Substitution Matrices from Set CoversPorto, A. H. L., Barbosa, V. C. — 2005
• Distributional Proteomics: Modelling Amino Acid Relationships by Measuring Their Patterns of Statistical Occurrence Across Proteins.Marcin Tatjewski, Dariusz M Plewczynski — 2015
• Statistical evaluation of local alignment features for prediction of protein allergenicity using supervised classification algorithmsD. Soeria-Atmadja, D. Soeria-Atmadja, U. Hammerling — 2004
• Organism specific Amino Acid Substitution MatricesJohn Edwards

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