Amino acid substitution matrices from protein blocks.

Keywords

Substitution (logic), Amino acid substitution, Amino acid, Computational biology, Similarity (geometry)

References

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Cited by

• Gene clpP2Encoding Peptidase in the Synechocystissp. PCC 6803 Cyanobacterium Controls Cell Sensitivity to PhotoinhibitionВ. Б. Паничкин, V. M. Glaser, В.В. Зинченко — 2001
• Conserved synteny and the zebrafish genome.Julian Catchen, Ingo Braasch, John H. Postlethwait — 2011
• A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein SequencesGolan Yona, Nathan Linial, Naftali Tishby — 1998
• Self‐organizing hierarchic networks for pattern recognition in protein sequenceJulio Prada Rodríguez — 1996
• On Near-Optimal Alignments of Biological Sequences熊谷 和佳子, 板橋 真里子, 三浦 秀一 — 1994
• A survey of homeobox genes in Chaetopterus variopedatus and analysis of polychaete homeodomains.Angelo Raffaele Meo — 1997
• Cloning, Yeast Expression, and Characterization of the Coupling of Two Distantly Related Arabidopsis thalianaNADPH-Cytochrome P450 Reductases with P450 CYP73A5*Richard Coates — 1997
• Empirical statistical estimates for sequence similarity searches.Valerio Olgiati — 1998
• Use of the phage display technique for detection of epitopes recognized by polyclonal rabbit gliadin antibodiesFrancisco Javier Sánchez Mora — 1998
• The Root of the Universal Tree of Life Inferred from Anciently Duplicated Genes Encoding Components of the Protein-Targeting MachineryTony Fahey — 1998
• Family pairwise search with embedded motif modelsLaëtitia Lemoine, Mathieu Verdurand, Bernard Vacher — 1999
• Characterization of single-nucleotide polymorphisms in coding regions of human genesPedro Navascués Palacio — 1999
• Automated Genome-Wide Protein Domain ExplorationBhanu Rekepalli — 2007
• PAC: Progressive Alignment with Consensus SequencesKe Liu, Mansur H. Samadzadeh — 2006
• A method for the improvement of threading‐based protein modelsAnita Kärner, Hasso Kukemelk, Richard J. Herdlein — 1999
• Gene Cloning and Nucleotide Sequencing and Properties of a Cocaine Esterase from Rhodococcus sp. Strain MB1Samantha A. Piggott — 2000
• Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.Rafael Ibáñez Calvé — 2000
• Darwin v. 2.0: an interpreted computer language for the biosciencesSantiago Petschen Verdaguer — 2000
• Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.Anastasha Renate — 2000
• A simple genetic algorithm for multiple sequence alignment.Cedric Gondro, B P Kinghorn — 2007

Related papers

• Navigating Molecular Evolution Using Substitution MappingsAndrew Low — 2017
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• Protein Structural Influence for Amino Acid Substitution in Helics Boudary Region.K. Konko, H. Irie, Hiroshi Kita — 1999
• Estimating the variability of substitution rates.Michael Bulmer — 1989
• Amino Acid Substitution Matrices Estimated by Maximum LikelihoodLeonardo Martins, Paolo Marinho de Andrade Zanotto — 2001
• [Protein structure prediction from analogy. II. Testing of substitution matrices and pseudo-potentials used to align protein sequences with folds].M Iu Lobanov, Fil'kenshteĭn Av — 2009
• Position Dependent and Independent Evolutionary Models Based on Empirical Amino Acid Substitution MatricesB. Barbiellini, Alexandra Portnova, Anna Chetoukhina — 2004