A Collection of Amino Acid Replacement Matrices Derived from Clusters of Orthologs
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Summary
The strong performance of the model of orthologous protein sequence divergence can be attributed to its ability to better approximate amino acid equilibrium frequencies to compositions found in alignment columns.
- Type
- book
- Published
- 2005-10-20
- Cited by
- 13
- References
- 41
- OpenAlex
- https://openalex.org/W16245010
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:7939164
Keywords
Geography
References
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Cited by
- Ortholog detection using the reciprocal smallest distance algorithm.
- Apolipocrustacein, formerly vitellogenin, is the major egg yolk precursor protein in decapod crustaceans and is homologous to insect apolipophorin II/I and vertebrate apolipoprotein B
- A model-independent approach to infer hierarchical codon substitution dynamics
- In Silico Prediction and Analysis of Caenorhabditis EF-hand Containing Proteins
- Protein evolution within and between species.
- Understanding the Effect of Secondary Structures and Aggregation on Human Protein Folding Class Evolution
- Recent developments in the MAFFT multiple sequence alignment program
- Comparing the Dictyostelium and Entamoeba Genomes Reveals an Ancient Split in the Conosa Lineage
- Phylogenetic analysis of the tenascin gene family: evidence of origin early in the chordate lineage
- Two Novel Src Homology 2 Domain Proteins Interact to Regulate Dictyostelium Gene Expression during Growth and Early Development
- Comparative genomics of the dictyostelids.
- The Genome of Dictyostelium discoideum.
- The Genome of Dictyostelium discoideum 15 15
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