SYFPEITHI: database for MHC ligands and peptide motifs

Keywords

Major histocompatibility complex, Biology, MHC class II, Epitope, Computational biology

References

• MHC Ligands and Peptide MotifsHans‐Georg Rammensee, Jutta Bachmann, Stefan Stevanović — 1998
• Molecular approaches to the control of infectious diseasesRobert M. Chanock, F. Brown — 1995
• Functional analysis of DR17(DR3)-restricted mycobacterial T cell epitopes reveals DR17-binding motif and enables the design of allele-specific competitor peptides.Annemieke Geluk, Krista E. van Meijgaarden, Annika Janson — 1992
• HLA-DR3 molecules can bind peptides carrying two alternative specific submotifs.Annemieke Geluk, Krista E. van Meijgaarden, Scott Southwood — 1994
• Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC moleculesKirsten Falk, Olaf Rötzschke, Stefan Stevanovié — 1991
• Peptide motif of HLA-B*1510Florian Seeger, Markus Schirle, Wieland Keilholz — 1999
• HLA-DR molecules from an antigen-processing mutant cell line are associated with invariant chain peptidesJanice M. Riberdy, John Newcomb, Michael J. Surman — 1992
• A comprehensive set of sequence analysis programs for the VAXJohn Devereux, Paul Haeberli, Oliver Smithies — 1984
• A DR17‐restricted T cell epitope from a secreted Mycobacterium tuberculosis antigen only binds to DR17 molecules at neutral pHAnnemieke Geluk, Krista E. van Meijgaarden, René R. P. de Vries — 1997
• Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanningJuergen Hammer, Elisa Bono, Fabio Gallazzi — 1994
• Prediction of HIV Peptide Epitopes by a Novel AlgorithmCaroline G. P. Roberts, GABRIEL E. MEISTER, Bill M. Jesdale — 1996
• Invariant chain peptides in most HLA-DR molecules of an antigen-processing mutant.Alessandro Sette, Stephanie Ceman, Ralph T. Kubo — 1992
• Specificity and promiscuity among naturally processed peptides bound to HLA-DR allelesRoman M. Chicz, Robert G. Urban, Joan C. Gorga — 1993
• A computer program for predicting possible cytotoxic T lymphocyte epitopes based on HLA class I peptide-binding motifs.J. D‘Amaro, J. G. A. Houbiers, Jan W. Drijfhout — 1995
• Two novel T cell epitope prediction algorithms based on MHC-binding motifs; comparison of predicted and published epitopes from Mycobacterium tuberculosis and HIV protein sequences.Gabriel Meister — 1995
• Natural peptide ligand motifs of two HLA molecules associated with myasthenia gravis.Georg Malcherek, Kirsten Falk, Olaf Rötzschke — 1993
• MHCPEP, a database of MHC-binding peptides: update 1996Vladimir Brusić, George B. Rudy, Aisling Kyne — 1997
• Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.Kenneth C. Parker, Maria A. Bednarek, J E Coligan — 1994
• A computer program: As a specific example of the broadening use of computers in chemistry covered in the previous News Focus by C&EN's Joe Haggin, three chemists discuss in detail one system for computer- assisted organic synthesis.Alan K. Long, Stewart D. Rubenstein, Leo J. Joncas — 1983
• MHCPEP, a database of MHC-binding peptides: update 1997Vladimir Brusić — 1998

Cited by

• Project 1: “Towards a prophylactic Epstein Barr Virus (EBV) vaccine to prevent EBV -associated malignancies and infectious mononucleosis” and project 2: “Analysing the transcriptional response to histone deacetylase inhibitors treatment in normal and cancer cell lines”Teja Bajt — 2014
• Multi-Scale Modeling of Antigen Presentation With Applications to Tuberculosis.Stewart T. Chang — 2007
• Examination of possible structural constraints of MHC‐binding peptides by assessment of their native structure within their source proteinsOra Schueler‐Furman, Yaël Altuvia, Hanah Margalit — 2001
• Harnessing the cellular immune system to the gene-prediction cart.Yeon-Suk Yang — 2001
• Peptide libraries for T cell epitope screening and characterization.R.E.E. Jongschaap, J.G. Conijn, P.S. Bindraban — 2002
• Are there HLA combinations typical supporting for or making resistant against aggressive and/or chronic periodontitis?Ryo Mizuta, Mio Matsueda, Hirokazu Endo — 2003
• The role of idiotype-specific immunity in antigen receptor diversityDavid G. Millar — 2010
• Novel strategy for identification of candidate cytotoxic T-cell epitopes from human preproinsulin.Roberto Escudero Barbero, María José García García — 2003
• Heterozygote advantage fails to explain the high degree of polymorphism of the MHCC. Vigny — 2004
• Cleaving proteins for the immune system.Rosa Isela Rubio, Gertrudis Bernal de Ruiz, Guillermo Salcedo Casillas — 2004
• T-cell epitope peptide vaccinesDakir Larara Machado da Silva — 2004
• Identification and characterization of epitopes of the receptor for hyaluronic acid-mediated motility (RHAMM/CD168) recognized by CD8+ T cells of HLA-A2-positive patients with acute myeloid leukemia.Enric Duaso — 2005
• Design of enhanced agonists through the use of a new virtual screening method: Application to peptides that bind class I major histocompatibility complex (MHC) moleculesJerzy Charytonowicz, Krzysztof Sztajkowski — 2005
• Learning MHC I - peptide bindingJosé Luis Andrès Sarasa — 2006
• Prediction and Molecular Modeling of T-cell Epitopes Derived from Placental Alkaline Phosphatase for use in Cancer ImmunotherapyAlejandro Silva Bascuñán — 2006
• CD8+ T-Cell Responses Identify β-Cell Autoimmunity in Human Type 1 Diabetes拓郎 原田, 哲 萩島, 敦 出口 — 2007
• In silico prediction of peptide-MHC binding affinity using SVRMHC.Wen Liu, Ji Wan, Xiangshan Meng — 2007
• The TAG Family of Cancer/Testis Antigens is Widely Expressed in a Variety of Malignancies and Gives Rise to HLA-A2–Restricted EpitopesSara J. Adair, Tiffany Carr, Mitsú J. Fink — 2008
• MHC presentation via autophagy and how viruses escape from itMargaret. Perkins — 2010
• Computer aided selection of candidate vaccine antigensR. A. Zakhidov, A. A. Vainer — 2010

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