Design of enhanced agonists through the use of a new virtual screening method: Application to peptides that bind class I major histocompatibility complex (MHC) molecules

Keywords

Computer science, Architectural engineering, Computer graphics (images), Engineering

References

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• Recognition of multiple epitopes in the human melanoma antigen gp100 by tumor-infiltrating T lymphocytes associated with in vivo tumor regression.Yutaka Kawakami, S Eliyahu, Cheryl Jennings — 1995
• Enhanced generation of specific tumor-reactive CTL in vitro by selected Melan-A/MART-1 immunodominant peptide analogues.Danila Valmori, Jean‐François Fonteneau, Concepción Marañón Lizana — 1998
• The epithelial tumor antigen MUC1 is expressed in hematological malignancies and is recognized by MUC1-specific cytotoxic T-lymphocytes.Peter Brossart, Anneliese Schneider, Patricia Dill — 2001
• Use of complete eluted peptide sequence data from HLA-DR and -DQ molecules to predict T cell epitopes, and the influence of the nonbinding terminal regions of ligands in epitope selection.Andrew Godkin, Miles P. Davenport, Anthony C. Willis — 1998
• Crystal structure of a non-canonical high affinity peptide complexed with MHC class I: a novel use of alternative anchors.Vasso Apostolopoulos, Minmin Yu, Adam L. Corper — 2002
• Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb.Daved H. Fremont, Masazumi Matsumura, E.A. Stura — 1994
• Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC moleculesKirsten Falk, Olaf Rötzschke, Stefan Stevanovié — 1991
• Immunologic and therapeutic evaluation of a synthetic peptide vaccine for the treatment of patients with metastatic melanomaSteven A. Rosenberg, James Chih‐Hsin Yang, Douglas J. Schwartzentruber — 1998
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• Structure‐based ligand design by a build‐up approach and genetic algorithm search in conformational spaceNicolas Budin, Nicolas Majeux, Catherine Tenette–Souaille — 2001
• Electrostatic effects in proteins: comparison of dielectric and charge models.Ernest L. Mehler, T. Solmajer — 1991
• SYFPEITHI: database for MHC ligands and peptide motifsHans‐Georg Rammensee, Jutta Bachmann, Niels Emmerich — 1999
• Generation of cytotoxic T‐cell responses with synthetic melanoma‐associated peptides in vivo: Implications for tumor vaccines with melanoma‐associated antigensE. Jaeger, Helga Bernhard, Pedro Romero — 1996
• Oncogenic proteins as tumor antigens.Mary L. Disis — 1996
• Importance of peptide amino and carboxyl termini to the stability of MHC class I molecules.Marlène Bouvier, Don C. Wiley — 1994

Cited by

• In silico designing breast cancer peptide vaccine for binding to MHC class I and II: A molecular docking study勝相 小城 — 2016
• Estudo in silico das bases moleculares responsáveis pela reatividade cruzada entre epitopos virais restritos ao alelo HLA-A*02:01Dinler A. Antunes — 2011
• Anti-diarrheal constituents of Alpinia oxyphylla.Junqing Zhang, Sheng Wang, Yonghui Li — 2013
• Structural Allele-Specific Patterns Adopted by Epitopes in the MHC-I Cleft and Reconstruction of MHC:peptide Complexes to Cross-Reactivity AssessmentDinler A. Antunes, Gustavo Fioravanti Vieira, Maurício Rigo — 2010
• Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentialsKarin Noy, Nir Kalisman, Chen Keasar — 2008
• Expansion of quiescent lung adenocarcinoma CD8+ T cells by MUC1-8-mer peptide-T2 cell-β2 microglobulin complexesJ.A. ATZIN-MÉNDEZ, José Sullivan López-González, Renata Báez — 2015
• Ligand design by a combinatorial approach based on modeling and experiment: application to HLA-DR4Erik Evensen, Diane Joseph‐McCarthy, Gregory A. Weiss — 2007
• DockTope: a Web-based tool for automated pMHC-I modellingMaurício Rigo, Dinler A. Antunes, Martiela Vaz de Freitas — 2015
• Identification of B and T cell epitope based peptide vaccine from IGF-1 receptor in breast cancer.Manijeh Mahdavi, Violaine Moreau, Majid Kheirollahi — 2017
• Algorithm-supported, mass and sequence diversity-oriented random peptide library designDaniela Kalafatović, Goran Mauša, Toni Todorovski — 2019

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