Gene classification artificial neural system

Keywords

Computational biology, Neural system, Artificial neural network, Artificial intelligence, Biology

References

• Automated assembly of protein blocks for database searching.一男 宮川, 勇 市嶋, 誠一 渡辺 — 1991
• Self-organization and associative memory: 3rd editionT. Kohonen — 1989
• The Protein Folding Problem and Tertiary Structure PredictionScott Wilson — 1994
• Molecular evolution: computer analysis of protein and nucleic acid sequences.Russell F. Doolittle — 1990
• Computer Systems That LearnSholom M. Weiss — 1990
• Computer Systems That Learn: Classification and Prediction Methods from Statistics, Neural Nets, Machine Learning and Expert SystemsSholom M. Weiss, Casimir A. Kulikowski — 1990
• Searching through sequence databases.Russell F. Doolittle — 1990
• Profile analysis: detection of distantly related proteins.Michael Gribskov, A. McLachlan, David Eisenberg — 1987
• Determination of eukaryotic protein coding regions using neural networks and information theory.Robert Farber, Alan S. Lapedes, Karl Sirotkin — 1992
• Self‐organized neural maps of human protein sequencesEdgardo A. Ferrán, Bernard Pflugfelder, Pascual Ferrara — 1994
• Back-propagation and counter-propagation neural networks for phylogenetic classification of ribosomal RNA sequences.Cathy Wu, Sailaja Shivakumar — 1994
• Combining evolutionary information and neural networks to predict protein secondary structureBurkhard Rost, Chris Sander — 1994
• Classification Neural Networks for Rapid Sequence Annotation and Automated Database OrganizationCathy Wu — 1993
• Protein classification artificial neural systemCathy Wu, George Whitson, Jerry McLarty — 1992
• Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach.Edward C. Uberbacher, Richard Mural — 1991
• Basic local alignment search tool.Stephen F. Altschul, Warren Gish, Webb Miller — 1990
• Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks.Jonathan D. Hirst, Michael J.E. Sternberg — 1992
• Pedagogical pattern selection strategiesChristian Cachin — 1994
• Escherichia coli promoters: neural networks develop distinct descriptions in learning to search for promoters of different spacing classesMichael C. O’Neill — 1992
• Predicting the secondary structure of globular proteins using neural network models.Ning Qian, Terrence J. Sejnowski — 1988

Cited by

• Evaluation of a neural networks QSAR method based on ligand representation using substituent descriptors. Application to HIV-1 protease inhibitors.Adina L. Milac, Speranța Avram, Andrei‐José Petrescu — 2006
• Gene family identification network designCathy Wu, Sailaja Shivakumar — 1998
• Neural networks for genome signature analysisLiangyou Chen, Lois Boggess — 2002
• Neural network based phylogenetic analysisThilini Halgaswaththa, Ajantha S. Atukorale, Mahen Jayawardena — 2012
• An Advanced Conjugate Gradient Training Algorithm Based on a Modified Secant EquationIoannis E. Livieris, Panagiotis Pintelas — 2012
• A new conjugate gradient algorithm for training neural networks based on a modified secant equationIoannis E. Livieris, Panagiotis Pintelas — 2013
• Gene Family Identification Network Design for Protein Sequence AnalysisCathy Wu, Hongzhan Huang, Jerry McLarty — 1999
• A Protein Class Database Organized with ProSite Protein Groups and PIR SuperfamiliesCathy Wu, Sheng Zhao, HSI-LIEN CHEN — 1996
• A Sequence Alignment-Independent Method for Protein ClassificationJohn K. Vries, Rajan Munshi, Dror Tobi — 2004
• GeneFIND web server for protein family identification and information retrievalCathy Wu, Sailaja Shivakumar, C V Shivakumar — 1998
• Artificial Neural Networks for Molecular Sequence AnalysisCathy Wu — 1997
• Pattern Recognition Techniques in Microarray Data AnalysisFaramarz Valafar — 2002
• Artificial neural networks for computer-based molecular design.Gisbert Schneider, Paul Wrede — 1998
• Motif identification neural design for rapid and sensitive protein family searchCathy Wu, Sheng Zhao, Hsi-Lien Chen — 1996
• Feature selection for genetic sequence classificationNadia Chuzhanova, Alan J. Jones, Steve Margetts — 1998
• A modified Kohonen network for DNA splice junction classificationThanakorn Naenna, R.A. Bress, Mark J. Embrechts — 2004
• Modular arrangement of proteins as inferred from analysis of homologyErik L. L. Sonnhammer, Daniel Kahn — 1994
• DNA classifications with self-organizing maps (SOMs)Thanakorn Naenna, R.A. Bress, Mark J. Embrechts — 2003
• Bayesian Protein Family ClassifierKunbin Qu, Lee Ann McCue, Charles E. Lawrence — 1998
• An Improved spectral conjugate Gradient Neural Network Training AlgorithmIoannis E. Livieris, Panagiotis Pintelas — 2012

Related papers

• Cloning and Characterization of Rat BAT3 cDNAToshinori Ozaki, Eiji Hanaoka, Masahiko Naka — 1999
• HLA-B-associated transcript 3 (Bat3)/Scythe is essential for p300-mediated acetylation of p53.Toru Sasaki, Eugene Gan, Andrew Wakeham — 2007
• Anthoxanthum Mosaic VirusP. L. Catherall — 1970
• Ecological and evolutionary importance of neighbors in the grass Anthoxanthum odoratumGerrit A. J. Platenkamp, T. C. Foin — 1990
• HSV-1 strain McKrae is more neuroinvasive than HSV-1 KOS after corneal or vaginal inoculation in miceHong Wang, David J. Davido, Lynda A. Morrison — 2013
• Bat3 deficiency accelerates the degradation of Hsp70-2/HspA2 during spermatogenesisToru Sasaki, Edyta Marcon, Tracy McQuire — 2008
• Viral Pathogens and the Advantage of Sex in the Perennial Grass Anthoxanthum odoratum [and Discussion]Steven E. Kelley — 1994
• Biology of Ecologically Marginal Populations of Anthoxanthum odoratum. I. Phenetics and DynamicsMichael C. Grant, Janis Antonovics — 1978
• Pan-genome study of Thermococcales reveals extensive genetic diversity and genetic evidence of thermophilic adaption.Chaofang Zhong, Lusheng Wang, Kang Ning — 2020