HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition
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Summary
The HMMerThread algorithm is able to automatically detect the presence of remotely conserved domains in proteins based on weak sequence similarity, which opens up new avenues for biological and medical studies.
- Type
- article
- Published
- 2011-03-10
- Cited by
- 6
- References
- 95
- Access
- Open access
- OpenAlex
- https://openalex.org/W21423752
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6104706
Keywords
Coke, Coal, Environmental science, Pulp and paper industry, Waste management
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- Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity
- Automatic multigenic family annotation: risks and solutions.
- HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold
- Diversity and prevalence of ANTAR RNAs across actinobacteria
- Lipopolysaccharide Responsive Beige-Like Anchor Subcellular Localization Involving in Vesicle Trafficking Responsive to Lipopolysaccharide
- Lipopolysaccharide-Responsive Beige-like Anchor (LRBA), a Novel Regulator of Human Immune Disorders