MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples
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- Type
- preprint
- Published
- 2018-01-04
- Cited by
- 7
- References
- 40
- Access
- Open access
- OpenAlex
- https://openalex.org/W2786547608
Keywords
Metagenomics, Human virome, Human Microbiome Project, Profiling (computer programming), Microbiome
References
- Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes
- Are Human Intestinal Eukaryotes Beneficial or Commensals?
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads
- Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
- Human oral viruses are personal, persistent and gender-consistent
- A Primer on Metagenomics
- From deep sequencing to viral tagging: Recent advances in viral metagenomics
- The oral microbiome in health and disease.
- Fast and sensitive protein alignment using DIAMOND
- Amplicon –Based Metagenomic Analysis of Mixed Fungal Samples Using Proton Release Amplicon Sequencing
- A Greedy Algorithm for Aligning DNA Sequences
- Metagenomic gene discovery: past, present and future.
- Exploring the viral world through metagenomics.
- Mapping specific functions in the capsid structure of canine parvovirus and feline panleukopenia virus using infectious plasmid clones.
- Environmental Genome Shotgun Sequencing of the Sargasso Sea
- Microbial metagenomics: beyond the genome.
- Grinder: a versatile amplicon and shotgun sequence simulator
Cited by
- MetaBinG2: a fast and accurate metagenomic sequence classification system for samples with many unknown organisms
- Adaptability of Soil pH through Innovative Microbial Approach
- KrakenOnMem: a memristor-augmented HW/SW framework for taxonomic profiling
- Salt flat microbial diversity and dynamics across salinity gradient
- The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice
- Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash
- Estudio del microbioma intestinal humano mediante metagenómica: avances recientes y desafíos para su implementación clínica
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