Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
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Summary
The recovery of 7,903 bacterial and archaeal metagenome-assembled genomes increases the phylogenetic diversity represented by public genome repositories and provides the first representatives from 20 candidate phyla.
- Type
- article
- Published
- 2017-09-11
- Cited by
- 1,646
- References
- 71
- Access
- Open access
- OpenAlex
- https://openalex.org/W2753961085
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:21220125
Keywords
Genome, Metagenomics, Phylum, Biology, Phylogenetic tree
References
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- The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
- First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking
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- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
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Cited by
- Dialogue on the nomenclature and classification of prokaryotes.
- Role of plasmid plasticity and mobile genetic elements in the entomopathogen Bacillus thuringiensis serovar israelensis
- Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 31 March 2015, New Orleans, USA.
- Biases in genome reconstruction from metagenomic data
- Finding life’s missing pieces
- Novel prosthecate bacteria from the candidate phylum Acetothermia
- Continuum of root–fungal symbioses for plant nutrition
- Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
- Meiosis: The Origins of Bias
- Microbial Biodiversity: Straight from the Dolphin's Mouth.
- Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
- How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
- Reply to the commentary “Uncultivated microbes—in need of their own nomenclature?”
- AMBER: Assessment of Metagenome BinnERs
- Culture-independent methods and high-throughput sequencing applied to evolutionary microbial genomics
- Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
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