InterProScan 5: genome-scale protein function classification

Keywords

File Transfer Protocol, Unix, Computer science, Java, Operating system

References

• Molecular network analysis of diseases and drugs in KEGG.Minoru Kanehisa — 2013
• A combined transmembrane topology and signal peptide prediction method.Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer — 2004
• TIGRFAMs and Genome Properties in 2013Daniel H. Haft, Jeremy Selengut, R. Alexander Richter — 2012
• PocketQuery: protein–protein interaction inhibitor starting points from protein–protein interaction structureDavid Ryan Koes, Carlos J. Camacho — 2012
• The ProDom database of protein domain families: more emphasis on 3DC. Bru — 2004
• PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic treesHuaiyu Mi, Anushya Muruganujan, Paul D. Thomas — 2012
• SMART 7: recent updates to the protein domain annotation resourceIvica Letunić, Tobias Doerks, Peer Bork — 2011
• Basic local alignment search tool.Stephen F. Altschul, Warren Gish, Webb Miller — 1990
• Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysisJonathan Lees, Corin Yeats, James R. Perkins — 2011
• InterProScan: protein domains identifierEmmanuel Quévillon, V. Silventoinen, S. Pillai — 2005
• SignalP 4.0: discriminating signal peptides from transmembrane regionsThomas Nordahl Petersen, Søren Brunak, Gunnar von Heijne — 2011
• HAMAP in 2013, new developments in the protein family classification and annotation systemIvo Pedruzzi, Catherine Rivoire, Andrea H Auchincloss — 2012
• Gene Ontology: tool for the unification of biologyMichael Ashburner, Catherine A. Ball, Judith A. Blake — 2000
• New and continuing developments at PROSITEChristian J A Sigrist, Edouard de Castro, Lorenzo Cerutti — 2012
• InterPro in 2011: new developments in the family and domain prediction databaseSarah Hunter, P. Jones, Alex Mitchell — 2011
• The ENZYME database in 2000Amos Bairoch — 2000
• A transposase strategy for creating libraries of circularly permuted proteinsManan Mehta, Shirley Liu, Jonathan J. Silberg — 2012
• The genome of woodland strawberry (Fragaria vesca)Vladimir Shulaev, Daniel James Sargent, Ross Crowhurst — 2010
• Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L.Shusei Sato, Hidetada Hirakawa, Sachiko Isobe — 2010
• A new generation of homology search tools based on probabilistic inference.Sean R. Eddy — 2009

Cited by

• The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives.Ana Álvarez Moreno — 2015
• Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans.英之 新井 — 2015
• Plasmodium knowlesi Genome Sequences from Clinical Isolates Reveal Extensive Genomic DimorphismHelene Skår — 2015
• The EMBL-EBI bioinformatics web and programmatic tools frameworkJuan Manuel Cortés Copete — 2015
• Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal栾义敏 — 2015
• Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering PlantsEnrique Soler Vázquez — 2015
• IMA Genome-F 4Francesca Favaretto — 2015
• Identification and characterization of a minisatellite contained within a novel miniature inverted-repeat transposable element (MITE) of Porphyromonas gingivalisGilles Perron — 2015
• Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotationsB R Appleman, Simon K. Boocock, Ref Weaver — 2016
• Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic IslandRoberto Rossi Precerutti — 2016
• Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynxDavid Katz, Bert Flugman — 2016
• TBro: visualization and management of de novo transcriptomesOrsolya Dohán, Carla Portulano, Cécile Basquin — 2016
• Growth condition dependency is the major cause of non-responsiveness upon genetic perturbationS. Arumugam, B. D. Acharya, E. Sampathkumar — 2017
• New Disulfide-Stabilized Fold Provides Sea Anemone Peptide to Exhibit Both Antimicrobial and TRPA1 Potentiating PropertiesCaldera Aburto, Jose Eos Trinidad — 2017
• Whipworm kinomes reflect a unique biology and adaptation to the host animal.José María Sanz García — 2017
• Complete genomic characterisation of two novel poxviruses (WKPV and EKPV) from western and eastern grey kangaroos.邱镇沪 — 2017
• Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins宏明 浅沼, 幸一 鈴木 — 2017
• Genetic and molecular basis of the immune system in the brachiopod Lingula anatinaMarco Gerdol, Yi‐Jyun Luo, Noriyuki Satoh — 2018
• The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomesNóra Á. Bana, Anna Nyiri, János Nagy — 2018
• Characterization of a novel organic solute transporter homologue from Clonorchis sinensisMadeleine Charney — 2018

Related papers

• Method and Implementation of Establishing FTP Server and Designing Disk QuotaWu Jie — 2004
• Analysis of FTP Communication Based on EtherealJun Cheng — 2007
• Setting and achievement of FTP serverHong Ji — 2007
• The Design and the Realization of the on-line Management of FTP ID Based on PHPLi Dai — 2007
• Uploading data to imicrobe/ivirus FTP v1Ken Youens‐Clark — 2015
• Developing FTP client application by vb. netWu Huai Guang — 2005
• Research on the Design and Implementation of FTP Client Based on JavaLiangyan Chu — 2021