Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
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Summary
The sequencing of restriction-site associated DNA (RAD) tags was described, which identified more than 13,000 SNPs, and three traits in two model organisms were mapped, using less than half the capacity of one Illumina sequencing run.
- Type
- article
- Published
- 2008-10-13
- Cited by
- 3,371
- References
- 20
- Access
- Open access
- OpenAlex
- https://openalex.org/W2169773990
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:16258169
Keywords
Biology, Molecular Inversion Probe, Genotyping, Genetics, SNP genotyping
References
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- Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map
- Construction of a genetic linkage map in man using restriction fragment length polymorphisms.
- Speed-mapping quantitative trait loci using microarrays
- High-resolution, high-throughput SNP mapping in Drosophila melanogaster
- Modified Serial Analysis of Gene Expression Method for Construction of Gene Expression Profiles of Microbial Eukaryotic Species
- COPI Complex Is a Regulator of Lipid Homeostasis
- Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
- Widespread Parallel Evolution in Sticklebacks by Repeated Fixation of Ectodysplasin Alleles
- Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers.
- Diversity Arrays Technology (DArT) for whole-genome profiling of barley.
- Complexity Reduction of Polymorphic Sequences (CRoPS™): A Novel Approach for Large-Scale Polymorphism Discovery in Complex Genomes
- Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays.
- SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
- RAD marker microarrays enable rapid mapping of zebrafish mutations
- Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations.
- AFLP: a new technique for DNA fingerprinting.
- High-Density Detection of Restriction-Site-Associated DNA Markers for Rapid Mapping of Mutated Loci in Neurospora
Cited by
- A next generation sequencing approach to constructing a genetic map for Populus tremula
- SNP discovery in non-model organisms using 454 next generation sequencing.
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- Adaptation genomics: the next generation.
- High-Resolution Genotyping via Whole Genome Hybridizations to Microarrays Containing Long Oligonucleotide Probes
- Adaptation genomics: next generation sequencing reveals a shared haplotype for rapid early development in geographically and genetically distant populations of rainbow trout
- Population genomics based on low coverage sequencing: how low should we go?
- Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra
- Using next-generation sequencing to isolate mutant genes from forward genetic screens
- Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
- Molecular Markers and Cotton Genetic Improvement: Current Status and Future Prospects
- High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations
- A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq)
- High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment
- High‐throughput SNPs for all: genotyping‐in‐thousands
- Within‐group relatedness is correlated with colony‐level social structure and reproductive sharing in a social fish
- Structural variation in the maize genome
- Genomic islands of divergence linked to ecotypic variation in sockeye salmon
- A second generation SNP and SSR integrated linkage map and QTL mapping for the Chinese mitten crab Eriocheir sinensis
- A genome-wide SNP-based genetic map and QTL mapping for agronomic traits in Chinese cabbage
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