The Universal Protein Resource (UniProt)

Keywords

UniProt, Annotation, Documentation, Identifier, Sequence database

References

• The FlyBase database of the Drosophila genome projects and community literature.The FlyBase Consortium — 2003
• A novel method for automatic and reliable functional annotation of proteinsWolfgang Fleischmann, Steffen Möller, Alain Gateau — 1998
• Protein sequence databases.Rolf Apweiler — 2000
• Automated annotation of microbial proteomes in SWISS-PROTAlexandre Gattiker, Karine Michoud, Catherine Rivoire — 2003
• Nucleotide Sequence Database PoliciesSøren Brunak, Antoine Danchin, Masahira Hattori — 2002
• The Genetic Association DatabaseKevin G. Becker, Kathleen C. Barnes, Tiffani J Bright — 2004
• The International Protein Index: An integrated database for proteomics experimentsPaul Kersey, Jorge Duarte, Allyson L. Williams — 2004
• A novel method for automatic functional annotation of proteinsWolfgang Fleischmann, S M√∂ller, A Gateau — 1999
• ProDom: Automated Clustering of Homologous DomainsFlorence Servant — 2002
• Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.Julian Gough, Kevin Karplus, Richard Hughey — 2001
• The InterPro Database, 2003 brings increased coverage and new featuresNicola Mulder — 2003
• The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene OntologyEvelyn Camon — 2004
• TIGRFAMs: a protein family resource for the functional identification of proteinsDaniel H. Haft — 2001
• WormBase: a cross-species database for comparative genomicsTodd Harris — 2003
• Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROTErnst Kretschmann, Wolfgang Fleischmann, Rolf Apweiler — 2001
• Recent improvements to the PROSITE databaseNicolas Hulo — 2004
• The iProClass integrated database for protein functional analysisCathy Wu, Hongzhan Huang, A. N. NIKOL'SKAYA — 2004
• The Ensembl genome database projectTim Hubbard — 2002
• The Protein Information ResourceCathy Wu — 2003
• Tolerating some redundancy significantly speeds up clustering of large protein databasesWeizhong Li, Lukasz Jaroszewski, Adam Godzik — 2002

Cited by

• Target-Decoy Search Strategy for Mass Spectrometry-Based ProteomicsJoshua E. Elias, Steven P. Gygi — 2010
• Protein domain prediction.Helgi I. Ingólfsson, Golan Yona — 2008
• Integrating protein annotations for the in silico prioritization of putative drug target proteins in malariaPhelelani Thokozani Mpangase — 2013
• Biophysical Insights into the Oligomerization of Bclxl Apoptotic RepressorV. Bhat — 2013
• Multiple methods for protein side chain packing using maximum weight cliques.J.B. Brown, K. C. Dukka Bahadur, Etsuji Tomita — 2006
• An Investigation in Aligning Multiple Protein Structures Using Biochemical and Biophysical PropertiesPaul Shealy, Homayoun Valafar — 2019
• Database Support for Top-Down ProteomicsGeneva G. Belford, Yong-Bin Kim — 2010
• MAO: a Multiple Alignment Ontology for nucleic acid and protein sequencesKhang Hoang, Chris G. Van de Walle — 2005
• Études fonctionnelles et structurales des mutants du gène CYP21A2 dans l’hyperplasie congénitale des surrénalesRita Menassa — 2009
• Gene3D: modelling protein structure, function and evolution山城 康嗣, 細井 昌子, 有村 達之 — 2005
• Identification of function-associated loop motifs and application to protein function predictionJordi Espadaler, Enrique Querol, Francesc Avilés — 2006
• Cognate ligand domain mapping for enzymes.Preciada Azancot — 2006
• The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaนรวรรณ บริสุทธิ์, พนิต กุลศิริ — 2007
• PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management systemВ. В. Воробьев — 2007
• AlterORF: a database of alternate open reading framesJustiniano García Prado — 2007
• SelenoDB 1.0 : a database of selenoprotein genes, proteins and SECIS elements功治 長島, 康行 永野, 正夫 大森 — 2008
• Metabolomics data analysis, visualization, and integration.Lloyd W. Sumner, Ewa Urbańczyk-Wochniak, Corey D. Broeckling — 2007
• Eimeria tenella: analysis of differentially expressed genes in the monensin- and maduramicin-resistant lines using cDNA array.I. S. Susanto — 2008
• Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle OntologyTom Van Zoeren — 2008
• Searching the protein interaction space through the MINT database.Andrew Chatr‐aryamontri, Andreas Zanzoni, Arnaud Céol — 2008

Related papers

• HAMAP in 2013, new developments in the protein family classification and annotation systemIvo Pedruzzi, Catherine Rivoire, Andrea H Auchincloss — 2012
• Protein sequence databases.Rolf Apweiler, Amos Bairoch, Cathy Wu — 2004
• A database of unique protein sequence identifiers for proteome studiesG. Babnigg, Carol S. Giometti — 2006
• The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000Amos Bairoch, Rolf Apweiler — 2000
• The role SWISS-PROT and TrEMBL play in the genome research environment.Vivien Junker, Sergio Contrino, Wolfgang Fleischmann — 2000
• Toward completion of the Earth’s proteome: an update a decade laterPablo Mier, Miguel A. Andrade‐Navarro — 2019
• The SWISS-PROT protein sequence data bank and its new supplement TREMBLAmos Bairoch — 1996
• The SWISS-PROT protein sequence data bank and its supplement TrEMBLAmos Bairoch, Rolf Apweiler — 1997