The International Protein Index: An integrated database for proteomics experiments

Keywords

Ensembl, RefSeq, Proteome, Proteomics, Computational biology

References

No references recorded for this paper.

Cited by

• Target-Decoy Search Strategy for Mass Spectrometry-Based ProteomicsJoshua E. Elias, Steven P. Gygi — 2010
• Automated Protein Structure Modeling with SWISS-MODEL Workspace and the Protein Model PortalLorenza Bordoli, Torsten Schwede — 2012
• Does protein structure influence trypsin miscleavage?María Teresa Encinas Manterola, Sheila Lucas Lastra — 2005
• PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management systemВ. В. Воробьев — 2007
• HIP2: An online database of human plasma proteins from healthy individualsStephanie Kadel — 2008
• Phosphorylation of SUMO-1 occurs in vivo and is conserved through evolution.Ivan Matić, Boris Maček, Maximiliane Hilger — 2008
• Simultaneous Characterization of Glyco- and Phosphoproteomes of Mouse Brain Membrane Proteome with Electrostatic Repulsion Hydrophilic Interaction Chromatography*秀史 猪股, 禎之 丸岡, 敏明 山崎 — 2010
• Production of rabbit monoclonal antibodies against mouse embryonic stem cells and identification of pluripotency-associated surface antigens.Caro Díaz, Pedro Nel — 2011
• A Systematic Study of Site-specific GalNAc-type O-Glycosylation Modulating Proprotein Convertase Processing*Andrew Smith, Arwen Bailey — 2011
• Proteomics-based identification of low-abundance signaling and regulatory protein complexes in native plant tissuesWolfgang Klug — 2012
• A chemically functionalized magnetic nanoplatform for rapid and specific biomolecular recognition and separation.Linda Carriger — 2013
• Application of chromosomal DNA and protein targeting for the identification of Yersinia pestisGiulio Ponzanelli — 2013
• Serum proteomics for gastric cancer.José Ríos Sanagustín — 2014
• The EMBL-EBI bioinformatics web and programmatic tools frameworkJuan Manuel Cortés Copete — 2015
• Investigation of protein expression dynamics in human tumor cells following pharmacological treatmentSven Nahnsen — 2010
• An integrated Bayesian framework for identifying phosphorylation networks in stimulated cells.Tapesh Santra, Boris Ν. Kholodenko, Walter Kölch — 2012
• Detection and quantitation of SUMO chains by mass spectrometry.Ivan Matić, Ronald T. Hay — 2012
• Protease specificity profiling by tandem mass spectrometry using proteome-derived peptide libraries.Oliver Schilling, Ulrich auf dem Keller, Christopher M. Overall — 2011
• Aggregation, Dissemination, and Analysis of High-throughput Scientific Data Sets in the Field of Proteomics.Jayson Falkner — 2008
• Graph-based methods for large-scale protein classification and orthology inferenceArnold Kuzniar — 2009

Related papers

• Reassessing Domain Architecture Evolution of Metazoan Proteins: Major Impact of Gene Prediction ErrorsAlinda Nagy, György Szláma, Eszter Szarka — 2011
• Gene3D: merging structure and function for a Thousand genomesJonathan Lees, Corin Yeats, Oliver Redfern — 2009
• MisPred: a resource for identification of erroneous protein sequences in public databasesAlinda Nagy, László Patthy — 2013
• RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curationWenjun Li, Kathleen O’Neill, Daniel H. Haft — 2020
• Reassessing Domain Architecture Evolution of Metazoan Proteins: Major Impact of Errors Caused by Confusing Paralogs and EpaktologsAlinda Nagy, László Bányai, László Patthy — 2011
• The SUPERFAMILY 1.75 database in 2014: a doubling of dataMatt E. Oates, Jonathan Stahlhacke, Dimitrios V. Vavoulis — 2014
• Comprehensive Identification and Characterization of Human Secretome Based on Integrative Proteomic and Transcriptomic DataGeng Chen, Jiwei Chen, Huanlong Liu — 2019
• ProGMap: an integrated annotation resource for protein orthologyArnold Kuzniar, Kuang Lin, Yujie He — 2009
• Gene3D: comprehensive structural and functional annotation of genomesC. Yeats, Jonathan Lees, Adam J. Reid — 2007