MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers

Keywords

Mega-, Transversion, Phylogenetic tree, Computer science, Context (archaeology)

References

• Molecular Evolutionary GeneticsMasatoshi Nei — 1987
• Theoretical foundation of the minimum-evolution method of phylogenetic inference.Andrey Rzhetsky, M Nei — 1993
• Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.M Nei, T Gojobori — 1986
• Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases.Koichiro Tamura — 1992
• CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAPJoseph Felsenstein — 1985
• Infinite allele model with varying mutation rate.M Nei, Ranajit Chakraborty, Paul A. Fuerst — 1976
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.Naruya Saitou, M Nei — 1987
• A Simple Method for Estimating and Testing Minimum-Evolution TreesAndrey Rzhetsky, Masatoshi Nei — 1992
• Estimation of evolutionary distance between nucleotide sequences.Fumio Tajima, M Nei — 1984
• The jackknife, the bootstrap, and other resampling plansBradley Efron — 1987
• Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.Koichiro Tamura, M Nei — 1993
• Toward Defining the Course of Evolution: Minimum Change for a Specific Tree TopologyW. M. Fitch — 1971
• Limitations of the evolutionary parsimony method of phylogenetic analysis.Jin Li, M Nei — 1990
• Atlas of protein sequence and structureMin-Yen Chang, M. O. Dayhoff, Richard V. Eck — 1965
• Evolution of Protein MoleculesSteve Jeffery — 1979

Cited by

• A Retinaldehyde Dehydrogenase as a Structural Protein in a Mammalian Eye LensWilliam Harry Crouse — 1996
• Genetic characterization of populations of a de novo arisen sugar beet pest, aubeonymus mariaefranciscae (coleoptera, curculionidae), by RAPD analysisЛаухин Станислав Алексеевич, Z. N. Gnibedenko — 1997
• Evolution of the cycloidea gene family in Antirrhinum and Misopates.Heinz W. Kloos — 1999
• Differentiation of Phylogenetically Related Slowly Growing Mycobacteria by Their gyrB SequencesStijn Vogels — 2000
• Changes in the recombinational environment affect divergence in the yellow gene of Drosophila.Juan José Lage Fernández — 2001
• Genetic Clustering of Hepatitis C Virus Strains and Severity of Recurrent Hepatitis after Liver TransplantationDomenico Taranto — 2001
• Genetic diversity of three lgt loci for biosynthesis of lipooligosaccharide (LOS) in Neisseria species.J. A. Miralles — 2002
• Phylogeny of hagfish based on the mitochondrial 16S rRNA gene.Доценко Сергей Павлович, Третьякова Ольга Ивановна, Макарова Наталья Анатольевна — 2003
• Evidence of intratypic recombination in natural populations of hepatitis C virus.大二郎 森本, 豊彦 井須, 祝嗣 濱内 — 2004
• Cloning of an orange-spotted grouper (Epinephelus coioides) Mx cDNA and characterisation of its expression in response to nodavirus.Sébastien Lengrand — 2006
• Eight Novel Capsular Polysaccharide Synthesis Gene Loci Identified in Nontypeable Streptococcus suis IsolatesКучерявый Михаил Михайлович — 2015
• Thioredoxin of golden pompano involved in the immune response to Photobacterium damselae.柯蔚青 — 2015
• Structure d'un locus de résistance à la rouille chez une espèce hautement polyploïde, la canne à sucre (2n=ca 12x=ca 115)C. Zini — 2010
• Expressed sequence tag analysis of adult human iris for the NEIBank Project: steroid-response factors and similarities with retinal pigment epithelium.Graeme Wistow, Steven L Bernstein, Sugata Ray — 2002
• MEGA: A Bio Computational Software for Sequence and Phylogenetic AnalysisVipan Kumar, Apurba Dey, Amarpal Singh — 2009
• بررسی فیلوژنتیکی گونه Charybdis hellerii از سختپوستان (سختپوستان، خرچنگها) در سواحل بین جزر و مدی چابهار بر اساس توالی ژنی قطعهی 1 ژن سیتوکروم اکسیداز (CO1)گیلان عطاران فریمان, یاسر فاطمی — 2014
• PSODA: Better Tasting and Less Filling Than PAUPHyrum Carroll, Mark Clement, Mark Ebbert — 2007
• Horizontal gene transfer in cyanobacterial signature genes.Shailaja Yerrapragada, Janet L. Siefert, George E. Fox — 2009
• Functional divergence and genome evolution of vertebrate protein kinases (kinome)Jianying Gu — 2003
• Virus and host determinants of HIV-1 infection and AIDS pathogenesisV. Wout, M. Brouwer, B. Hooibrink — 1999

Related papers

• Research on Molecular Phylogenetic Relationship of Partial Blennioidei Based on ITS-1 SequencesWei Wang — 2012
• Alignment of protein sequences by their profilesMarc A. Martı́-Renom, M. S. Madhusudhan, Andrej Šali — 2004
• INTERALIGN: interactive alignment editor for distantly related protein sequencesOlivier Pible, G. Imbert, Jean‐Luc Pellequer — 2005
• A comprehensive comparison of multiple sequence alignment programsJulie Thompson, Frédéric Plewniak, Olivier Poch — 1999
• Homology-extended sequence alignmentV. A. Simossis — 2005
• ALIGN_MTX - An optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignmentBoris Vishnepolsky, Malak Pirtskhalava — 2009
• Biological Sequence Alignment for Bioinformatics Applications Using MATLABSonali Vijan — 2011
• Hardware Acceleration of Bioinformatics Sequence Alignment ApplicationsL. Hasan — 2011
• A novel genetic approach for optimized biological sequence alignmentGautam Garai, Biswanath Chowdhury — 2012
• A review on multiple sequence alignment from the perspective of genetic algorithm.Biswanath Chowdhury, Gautam Garai — 2017