Estimating the Rate of Intersubtype Recombination in Early HIV-1 Group M Strains
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Summary
The results imply that intersubtype recombination may have occurred in approximately 20% of lineages evolving over a period of 30 years and confirm intersub type recombination as a substantial force in generating HIV-1 group M diversity.
- Type
- article
- Published
- 2012-12-12
- Cited by
- 32
- References
- 63
- Access
- Open access
- OpenAlex
- https://openalex.org/W1969102846
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:9822820
Keywords
Biology, Recombination, Phylogenetic tree, Phylogenetics, Lineage (genetic)
References
- Potential impact of recombination on sitewise approaches for detecting positive natural selection.
- BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
- On the fidelity of DNA replication. Lack of exodeoxyribonuclease activity and error-correcting function in avian myeloblastosis virus DNA polymerase.
- Some probabilistic and statistical problems in the analysis of DNA sequences
- Human immunodeficiency virus: Phylogeny and the origin of HIV-1
- Consequences of recombination on traditional phylogenetic analysis.
- Recombinant Viruses and Early Global HIV-1 Epidemic
- Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
- Background on Bruno
- Counting labeled transitions in continuous-time Markov models of evolution
- Estimating reassortment rates in co-circulating Eurasian swine influenza viruses
- HIV-1 Dynamics in Vivo: Virion Clearance Rate, Infected Cell Life-Span, and Viral Generation Time
- Identification of a major restriction in HIV-1 intersubtype recombination.
- Dimerization and Template Switching in the 5′ Untranslated Region between Various Subtypes of Human Immunodeficiency Virus Type 1
- First Snapshots of the HIV-1 RNA Structure in Infected Cells and in Virions*
- Recombination in HIV-1
- GiRaF: robust, computational identification of influenza reassortments via graph mining
- Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination.
- The origins of acquired immune deficiency syndrome viruses: where and when?
- Learning to count: robust estimates for labeled distances between molecular sequences.
Cited by
- Molecular epidemiology of a primarily MSM acute HIV‐1 cohort in Bangkok, Thailand and connections within networks of transmission in Asia
- HIV-1 in the United Kingdom: population dynamics and genetic evolution
- Overview of the Current State of the Epidemic
- Contribution of recombination to the evolutionary history of HIV.
- Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1–PB2–HA Gene Complex
- Drug Resistance in Non-B Subtype HIV-1: Impact of HIV-1 Reverse Transcriptase Inhibitors
- The early spread and epidemic ignition of HIV-1 in human populations
- MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
- Comparative analysis of the molecular mechanisms of recombination in hepatitis C virus.
- Development of gold nanoparticle-based antigen delivery platform for vaccines against HIV-1
- HIV prevention policy and programme planning: What can mathematical modelling contribute?
- The use of genetic sequencing technologies to determine HIV-1 viral tropism and to evaluate the effects of maraviroc on patient viral populations
- Emerging Concepts of Data Integration in Pathogen Phylodynamics
- [Human immunodeficiency virus: position of Blood Working Group of the Federal Ministry of Health].
- Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison
- Inference of evolutionary and ecological processes from reticulate evolution in RNA viruses
- Stabilité et fonctionnalité des glycoprotéines de l’enveloppe du VIH-1 recombinant CRF01_AE : rôle de l’histidine en position 375
- Adaptive Evolution of the SIV Envelope Protein During Early SIV Infection
- The Measure and Dynamics of Genetic Diversity in Structured Populations
- Evidence for a recombinant origin of HIV-1 Group M from genomic variation
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