Darwin v. 2.0: an interpreted computer language for the biosciences

Keywords

Geography

References

• Evaluation Measures of Multiple Sequence AlignmentsJacobus Wilhelmus Hermanus Philippus Verhagen — 2000
• Amino acid substitution matrices.Steven Henikoff, Jorja G. Henikoff — 2000
• Near optimal multiple sequence alignments using a traveling salesman problem approachChantal Korostensky, Gastón H. Gonnet — 1999
• Exhaustive matching of the entire protein sequence database.Gastón H. Gonnet, Mark A. Cohen, Steven A. Benner — 1992
• The SWISS-PROT protein sequence data bank and its supplement TrEMBLAmos Bairoch, Rolf Apweiler — 1997
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.Naruya Saitou, M Nei — 1987
• Amino acid substitution matrices from protein blocks.Steven Henikoff, Jorja G. Henikoff — 1992
• An algorithm for the identification of proteins using peptides with ragged N‐ or C‐termini generated by sequential endo‐ and exopeptidase digestionsChantal Korostensky, Werner Staudenmann, Paola Dainese — 1998
• [서평]「Algorithms on Strings, Trees, and Sequences」김동규 — 2000
• The neighbor-joining method : A new method for reconstructing phylogenetic treesNaoki Saito — 1987
• The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998Amos Bairoch — 1998
• Probabilistic Ancestral Sequences and Multiple AlignmentsG. Gonnet, S. Benner — 1996
• Pairwise Alignment with Scoring on TuplesL. Knecht — 1995

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• Surprising results on phylogenetic tree building methods based on molecular sequencesJ. A. Martínez-Álvarez — 2012
• Classification of plant thioredoxins by sequence similarity and intron position.Yves Meyer, Florence Vignols, Jean Philippe Reichheld — 2002
• Classification d'ARN codants et d'ARN non-codantsA. Fontaine — 2009
• High specificity automatic function assignment for enzyme sequencesDan Roden — 2011
• Codon-based Models of Evolution and Applications in Mammalian PhylogenyAdrian Schneider — 2009
• A comparative genomics approach for studying ancestral proteins and evolution.Ping Liang, Monica Riley — 2001
• Phylogenetic trees based on k-nucleotide frequenciesMarkus Friberg, Gastón H. Gonnet, Peter von Rohr — 2004
• Gene fusions and gene duplications: relevance to genomic annotation and functional analysisMargrethe H. Serres, Monica Riley — 2005
• Alignment of genomic sequences with intrinsic disorder and tandem repeatsAdam M. Szalkowski — 2013
• A simple covarion‐based approach to analyse nucleotide substitution ratesJ. Siltberg, David A. Liberles — 2002
• Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequencesChristophe Dessimoz, M. Gil, Adrian Schneider — 2006
• QQT proteins colocalize with microtubules and are essential for early embryo development in Arabidopsis.Sylvie Lahmy, Jocelyne Guilleminot, Anne‐Catherine Schmit — 2007
• Retrieving sequences of enzymes experimentally characterized but erroneously annotated : the case of the putrescine carbamoyltransferaseD. G. Naumoff, Ying Xu, Nicolas Glansdorff — 2004
• (Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactériesStéphanie Bocs — 2004
• The structure of porcine parvovirus: comparison with related viruses.A.A. Simpson, Benoı̂t Hébert, Gail M. Sullivan — 2002
• A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous dataZizhen Yao, Walter L. Ruzzo — 2006
• Characterization and regulation of the Resistance-Nodulation-Cell Division-type multidrug efflux pumps MdtABC and MdtUVW from the fire blight pathogen Erwinia amylovoraDaniel Pletzer, Helge Weingart — 2014
• Markov Models of Amino Acid Substitution to Study Proteins with Intrinsically Disordered RegionsAdam M. Szalkowski, Maria Anisimova — 2011

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