Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Keywords

Biology, Human genetics, Human genome, Genome, Computational biology

References

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Cited by

• Computational methods for identification of disease-associated variations in exome sequencingAlex H. Wagner, Edwin M. Stone, William N. Street — 2014
• Analyse bioinformatique du transcriptome des champignons mycorhiziens Tuber melanosporum et Glomus intraradicesÉmilie Tisserant — 2011
• Molecular and cellular basis of hematopoietic stem cells maintenance and differentiationK. Duong — 2014
• LOCAS - a low coverage assembler for next generation sequencing and resequencing dataJuliane D. Klein — 2010
• Regulation of Adipocyte Transcription by PPARgamma LigandsSonia E. Step — 2014
• High Performance Computing for DNA Sequence Alignment and AssemblySteven L. Salzberg, Michael C. Schatz — 2010
• Phenotypic Plasticity and Epigenetics In The Honeybee OvaryM. Leask — 2014
• Parallelization on graphic hardware : contributions to RNA folding and sequence alignment. (Parallélisation sur matériel graphique : contributions au repliement d'ARN et à l'alignement de séquences)Guillaume Rizk — 2011
• Plant-Pathogen InteractionsPaul R. J. Birch, John T. Jones — 2014
• Epigenetics of Stress Adaptation in Arabidopsis: the Case of Histone ModificationsBehnaz Najafi Majdabadi Farahani — 2013
• Reduced Representation Bisulfite Sequencing of Human Neutrophils Reveals Widespread Inter-Individual Epigenetic VariationAniruddha Chatterjee — 2013
• Designing efficient and specific endoribonuclease-prepared siRNAs.Vineeth Surendranath, Mirko Theis, Bianca Habermann — 2013
• Transcriptomic identification and characterization of levamisole resistance associated genes in the swine nodular worm Oesophagostomum dentatumNathan M. Romine — 2012
• Probabilistic Models for Collecting, Analyzing, and Modeling Expression DataH. Le — 2013
• FPGA-based acceleration of the RMAP short read mapping toolPooja Mhapsekar — 2013
• Virtual Environment for Next Generation Sequencing AnalysisOlivier Terzo, Lorenzo Mossucca, Andrea Acquaviva — 2012
• PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seedsVan Jacobson, Jerry Fiddler, J. Greer — 2009
• Methylation analysis by DNA immunoprecipitationИ Н Бесалиев, М. Ф. Тухфатуллин — 2009
• Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates.Kevin Schutz, Jay R. Hesselberth, Stanley Fields — 2010
• Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD TagsR. Jansma — 2010

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