LOCAS - a low coverage assembler for next generation sequencing and resequencing data
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Summary
This work comprises extensions to these assembly algorithms, which are used in the reassembly step of the homology-guided assembly approach, which aims at assembling not only regions that are homologous between the target and reference genome but also longer variant regions.
- Type
- dissertation
- Published
- 2010-01-01
- Cited by
- 0
- References
- 70
- OpenAlex
- https://openalex.org/W1782324
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:473970
Keywords
Computer science
References
- Sequencing end-labeled DNA with base-specific chemical cleavages.
- ALLPATHS: de novo assembly of whole-genome shotgun microreads.
- Algorithms for Some String Matching Problems Arising in Molecular Genetics
- Assembling Genomic DNA Sequences with PHRAP
- A whole-genome assembly of Drosophila.
- Comparative genome assembly
- On the shortest spanning subtree of a graph and the traveling salesman problem
- SEQAID: a DNA sequence assembling program based on a mathematical model
- Toward Simplifying and Accurately Formulating Fragment Assembly
- Single-Molecule DNA Sequencing of a Viral Genome
- Visualization of image data from cells to organisms
- Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler
- The Atlas genome assembly system.
- Combinatorial algorithms for DNA sequence assembly
- Searching for SNPs with cloud computing
- How to map billions of short reads onto genomes
- Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry
- A New Algorithm for DNA Sequence Assembly
- De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
- BFAST: An Alignment Tool for Large Scale Genome Resequencing
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