GOLDsurfer: three dimensional display of linkage disequilibrium

Keywords

Linkage disequilibrium, Disequilibrium, Linkage (software), Graphics, Java

References

• Haplotype tagging for the identification of common disease genesGillian C.L. Johnson, Laura Esposito, Bryan J. Barratt — 2001
• Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data.Na Li, Matthew Stephens — 2003
• The complex interplay among factors that influence allelic associationKrina T. Zondervan, Lon R. Cardon — 2004
• Genetic Data Analysis II . By Bruce S. Weir, Sunderland, Massachusetts. Sinauer Associates, Inc.445 pages. ISBN 0-87893-902-4.William G. Hill — 1996
• An integrated haplotype map of the human major histocompatibility complex.Emily C. Walsh, Kristie A. Mather, S. F. Schaffner — 2003
• A first-generation linkage disequilibrium map of human chromosome 22Elisabeth Dawson, Gonçalo R. Abecasis, Suzannah Bumpstead — 2002
• Linkage disequilibrium and the mapping of complex human traits.Kenneth M. Weiss, Andrew G. Clark — 2002
• Genetic Data Analysis II.B. S. Weir — 1997
• How many diseases does it take to map a gene with SNPs?Kenneth M. Weiss, Joseph D. Terwilliger — 2000
• Genome scans and candidate gene approaches in the study of common diseases and variable drug responses.David B. Goldstein, Kourosh R. Ahmadi, Mike E. Weale — 2003
• A new statistical method for haplotype reconstruction from population data.Matthew Stephens, Nicholas Smith, Peter Donnelly — 2001
• Using haplotype blocks to map human complex trait loci.Lon R. Cardon, Gonçalo R. Abecasis — 2003
• GOLD-Graphical Overview of Linkage DisequilibriumGonçalo R. Abecasis, William Cookson — 2000
• A coalescent-based method for detecting and estimating recombination from gene sequences.Gil McVean, Philip Awadalla, Paul Fearnhead — 2002
• [International HapMap project].National Cancer Institute — 2005

Cited by

• MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markersTom R. Gaunt, Santiago Rodrı́guez, Carlos Zapata — 2006
• Bioinformatics for immunomicsDarren D.R. Flower, Matthew Davies, Shoba Ranganathan — 2010
• Replication of Genome-Wide Association Signals in UK Samples Reveals Risk Loci for Type 2 DiabetesEleftheria Zeggini, Michael N. Weedon, Cecilia M. Lindgren — 2007
• A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms.Marcos Miretti, Emily C. Walsh, Xiayi Ke — 2005
• Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studiesFredrik Pettersson, Andrew P. Morris, Michael R. Barnes — 2008
• Genetic Analysis of Completely Sequenced Disease-Associated MHC Haplotypes Identifies Shuffling of Segments in Recent Human HistoryJames A. Traherne, Roger W. Horton, Anne N. Roberts — 2006
• A 77-kilobase region of chromosome 6p22.2 is associated with dyslexia in families from the United Kingdom and from the United States.Clyde Francks, Silvia Paracchini, Shelley D. Smith — 2004
• Data quality control in genetic case-control association studiesCarl A. Anderson, Fredrik Pettersson, Geraldine M Clarke — 2010
• Further evidence that the KIAA0319 gene confers susceptibility to developmental dyslexiaDenise Harold, Silvia Paracchini, Thomas Scerri — 2006
• Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'Tom R. Gaunt, Santiago Rodrı́guez, Ian N.M. Day — 2007
• Modeling associations between genetic markers using Bayesian networksEdwin Villanueva, Carlos Dias Maciel — 2010
• Management, presentation and interpretation of genome scans using GSCANDBMartin S. Taylor, William Valdar, Ashish Kumar — 2007
• Basic statistical analysis in genetic case-control studiesGeraldine M Clarke, Carl A. Anderson, Fredrik Pettersson — 2011
• Forensic DNA and bioinformaticsLucía Bianchi, Píetro Lió — 2006
• A Bioinformatic Platform for a Bayesian, Multiphased, Multilevel Analysis in ImmunogenomicsP. Antal, A. Millinghoffer, G. Hullám — 2009

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• Gametic disequilibrium and physical distance.Carlos Zapata, G. Visedo — 1995
• Comparing linkage and association analyses in sheep points to a better way of doing GWAS.Kathryn E. Kemper, Hans D. Daetwyler, Peter M. Visscher — 2012
• Linkage Disequilibrium: Ancient History Drives the New GeneticsGonçalo R. Abecasis, Debashis Ghosh, Thomas E. Nichols — 2005
• Genetic Location of Heritable Traits Through Association Studies: A ReviewD. García, J. Canon, S. Dunner — 2002