3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples

Keywords

DNA microarray, Gene expression profiling, Gene expression, Biology, Gene

References

• Array of hope武史 吉田, 隆則 深尾, 孝光 浦久保 — 1999
• Overview of DNA Sequencing StrategiesClaude Paul — 2011
• Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay.Maureen Cronin, Mylan Pho, Debjani Dutta — 2004
• Desmoid tumor: a disease opportune for molecular insights.D Kotiligam, Alexander J. Lazar, Raphael E. Pollock — 2008
• Use of a cDNA microarray to analyse gene expression patterns in human cancerJoseph L. DeRisi, Lolita Penland, Patrick O. Brown — 1996
• Enzinger and Weiss's Soft Tissue TumorsSharon W. Weiss, John R. Goldblum — 2001
• Molecular classification of cutaneous malignant melanoma by gene expression profilingM. Bittner, Paul S. Meltzer, Yangyang Chen — 2000
• Microarray and histopathological analysis of tumours: the future and the past?Sunil R. Lakhani, Alan Ashworth — 2001
• Gene expression profiles of laser-captured adjacent neuronal subtypesLin Luo, Ranelle Salunga, Hongqing Guo — 1999
• Analysing differential gene expression in cancerPeng Liang, Arthur B. Pardee — 2003
• Increased beta-catenin protein and somatic APC mutations in sporadic aggressive fibromatoses (desmoid tumors).Benjamin A. Alman, C Li, Mandy E. Pajerski — 1997
• RNA expression analysis of formalin-fixed paraffin-embedded tumorsShannon K. Penland, Temitope O. Keku, Chad Torrice — 2007
• Statistical significance for genomewide studiesJohn D. Storey, Robert Tibshirani — 2003
• RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing.Brian T. Wilhelm, Josette‐Renée Landry — 2009
• Insulin receptor activation in solitary fibrous tumoursYanping Li, Qing Chang, BP Rubin — 2007
• RNA-Seq: a revolutionary tool for transcriptomicsZhong Wang, Mark Gerstein, M Snyder — 2009
• Predominance of beta-catenin mutations and beta-catenin dysregulation in sporadic aggressive fibromatosis (desmoid tumor)Sabine Tejpar, Friedel Nollet, Catherine Li — 1999
• The fibromatosis signature defines a robust stromal response in breast carcinomaAndrew H. Beck, Íñigo Espinosa, C. Blake Gilks — 2008
• Systematic variation in gene expression patterns in human cancer cell linesDouglas T. Ross, Uwe Scherf, Michael B. Eisen — 2000
• Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia.Lars Bullinger, Konstanze Döhner, Eric Bair — 2004

Cited by

• Multiplex Analysis of PolyA-linked Sequences (MAPS): An RNA-seq strategy to profile poly(A+) RNAYu Zhou, Hairi Li, Jie Huang — 2014
• Understanding the pathogenesis of Alzheimer’s disease: will RNA‐Seq realize the promise of transcriptomics?Greg T. Sutherland, Michael Janitz, Jillian J. Kril — 2011
• The next generation: Using new sequencing technologies to analyse gene regulationRebecca Cullum, Olivia Alder, Pamela A. Hoodless — 2011
• High-throughput RNA sequencing of a formalin-fixed, paraffin-embedded autopsy lung tissue sample from the 1918 influenza pandemicYongli Xiao, John C. Kash, Stephen B. Beres — 2013
• Isolating Viral and Host RNA Sequences from Archival Material and Production of cDNA Libraries for High-Throughput DNA SequencingYongli Xiao, Zong‐Mei Sheng, Jeffery K. Taubenberger — 2015
• Advances in the Molecular Analysis of Soft Tissue Tumors and Clinical ImplicationsAdrián Mariño‐Enríquez — 2015
• Genomic limitations to RNA sequencing expression profiling.Cory D. Hirsch, Cory D. Hirsch, Nathan M. Springer — 2015
• Functional consequences of bidirectional promotersWu Wei, Vicent Pelechano, Aino I. Järvelin — 2011
• Next Generation DNA Sequencing and the Future of Genomic MedicineMatthew W. Anderson, Iris Schrijver — 2010
• Temporal Dynamics of the Transcriptional Response to Dengue Virus Infection in Nicaraguan ChildrenStephen J. Popper, Aubree Gordon, Minghsun Liu — 2012
• Cancer gene expression signatures - the rise and fall?Frédéric Chibon — 2013
• Grading of soft tissue sarcomas: from histological to molecular assessment.Agnès Neuville, Frédéric Chibon, Jean‐Michel Coindre — 2014
• Fragaria: a genus with deep historical roots and ripe for evolutionary and ecological insights.Aaron Liston, Richard Cronn, Tia‐Lynn Ashman — 2014
• Sequencing of first-strand cDNA library reveals full-length transcriptomesSaurabh Agarwal, Todd S. Macfarlan, Maureen A. Sartor — 2015
• Alternative cleavage and polyadenylation: extent, regulation and functionRan Elkon, Alejandro P. Ugalde, Reuven Agami — 2013
• Clinically relevant molecular subtypes in leiomyosarcomaXiangqian Guo, Vickie Y. Jo, Anne M. Mills — 2015
• Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis.Michelle Howarth, David Simpson, Siu P. Ngok — 2014
• So, You Want to Use Next Generation Sequencing In Marine Systems? Insight from the Pan Pacific Advanced Studies InstituteDemian A. Willette, Fred W. Allendorf, Paul H. Barber — 2014
• Increased midkine expression correlates with desmoid tumour recurrence: a potential biomarker and therapeutic targetChiara Colombo, Chad J. Creighton, Markus P. Ghadimi — 2011
• HEB associates with PRC2 and SMAD2/3 to regulate developmental fatesSe‐Jin Yoon, Joseph W. Foley, Julie C. Baker — 2015

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