Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection

Keywords

Biology, Serotype, Streptococcus pneumoniae, Genotype, Genetics

References

• The Soluble Specific Substance of Pneumococcus: V. On the Chemical Nature of the Aldobionic Acid from the Specific Polysaccharide of Type III PneumococcusMichael Heidelberger, Walther F. Goebel — 1927
• Genomic analysis of extra-intestinal pathogenic Escherichia coli urosepsis.Alan McNally, Fahad Alhashash, Michael Collins — 2013
• Time‐dependent rates of molecular evolutionSimon Y. W. Ho, Robert Lanfear, Lindell Bromham — 2011
• Transformation of encapsulated Streptococcus pneumoniaeJanet Yother, Larry S. McDaniel, David E. Briles — 1986
• Serotype-specific mortality from invasive Streptococcus pneumoniae disease revisitedPernille Martens, Signe Westring Worm, Bettina Lundgren — 2004
• Strong association between capsular type and virulence for mice among human isolates of Streptococcus pneumoniaeDavid E. Briles, Marilyn J. Crain, Barry M. Gray — 1992
• A two‐component system that controls the expression of pneumococcal surface antigen A (PsaA) and regulates virulence and resistance to oxidative stress in Streptococcus pneumoniaeJames McCluskey, Jason Hinds, S. Husain — 2004
• Changes in occurrence of capsular serotypes of Streptococcus pneumoniae at Boston City Hospital during selected years between 1935 and 1974Maxwell Finland, Mildred W. Barnes — 1977
• Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate BacteriophagesPatricia Romero, Nicholas J. Croucher, N. Luisa Hiller — 2009
• Global phenotypic characterization of bacteriaBarry R. Bochner — 2008
• Pneumococcal Serotypes and Mortality following Invasive Pneumococcal Disease: A Population-Based Cohort StudyZitta Barrella Harboe, Reimar W. Thomsen, Anders H. Riis — 2009
• Single base bulges in small RNA hairpins enhance ethidium binding and promote an allosteric transition.Susan A. White, David E. Draper — 1987
• Evolution of MRSA During Hospital Transmission and Intercontinental SpreadSimon R. Harris, Edward J. Feil, Matthew T. G. Holden — 2010
• Molecular epidemiology and genetic diversity of pneumococcal carriage among children in Beni State, Bolivia.Donald Inverarity, Mathew Diggle, Roisin Ure — 2011
• Therapeutic failure and selection of resistance to quinolones in a case of pneumococcal pneumonia treated with ciprofloxacinEmilio Pérez‐Trallero, J M García-Arenzana, J.A. Jimenez — 1990
• Phenotype microarrays for high-throughput phenotypic testing and assay of gene function.Barry R. Bochner, Peter Gadzinski, Eugenia Panomitros — 2001
• A CONTRIBUTION TO THE EPIDEMIOLOGY OF LOBAR PNEUMONIAErnest G. Stillman — 1916
• Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal InfectionsMaxime Levert, Oana Zamfir, Olivier Clermont — 2010
• Evolutionary dynamics of Staphylococcus aureus during progression from carriage to diseaseBernadette Young, Tanya Golubchik, Elizabeth M. Batty — 2012
• Antibody response to pneumococcal vaccination in children younger than five years of age.Robert M. Douglas, James C. Paton, Shayla Duncan — 1983

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• An investigation into clinical, epidemiological and genomic changes in epidemic Salmonella blood stream infection in MalawiN. Feasey — 2014
• Regulation of the PatAB efflux pump in Streptococcus pneumoniaeAlison J. Baylay — 2014
• Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using GubbinsNicholas J. Croucher, Andrew J. Page, Thomas R. Connor — 2014
• The application of genomics to tracing bacterial pathogen transmission.Nicholas J. Croucher, Xavier Didelot — 2015
• The Role of Host and Microbial Factors in the Pathogenesis of Pneumococcal Bacteraemia Arising from a Single Bacterial Cell BottleneckAlice Gerlini, Leonarda Colomba, Leonardo Furi — 2014
• Pneumococcus adapts to the sickle cell host.Timothy J. Mitchell, Andrea M. Mitchell — 2014
• Genomic analyses of pneumococci from children with sickle cell disease expose host-specific bacterial adaptations and deficits in current interventionsRob Carter, Joshua Wolf, Tim van Opijnen — 2014
• Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan AfricaChinyere K. Okoro, Lars Barquist, Thomas R. Connor — 2015
• The genome of Coxiella burnetii Z3055, a clone linked to the Netherlands Q fever outbreaks, provides evidence for the role of drift in the emergence of epidemic clones.Felicetta D’Amato, Laetitia Rouli, Sophie Edouard — 2014
• Mechanisms and impact of genetic recombination in the evolution of Streptococcus pneumoniaeChrispin Chaguza, Jennifer Cornick, Dean Everett — 2015
• Diversification of bacterial genome content through distinct mechanisms over different timescalesNicholas J. Croucher, Paul Coupland, Abbie E. Stevenson — 2014
• A Novel Gene Amplification Causes Upregulation of the PatAB ABC Transporter and Fluoroquinolone Resistance in Streptococcus pneumoniaeAlison J. Baylay, Alasdair Ivens, Laura J. V. Piddock — 2015
• Multiple mutations and increased RNA expression in tetracycline-resistant Streptococcus pneumoniae as determined by genome-wide DNA and mRNA sequencing.Andréanne Lupien, Hélène Gingras, Michel G. Bergeron — 2015
• Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal EvolutionRafal Mostowy, Nicholas J. Croucher, William P. Hanage — 2014
• The role of ZmpC in the clinical manifestation of invasive pneumococcal disease.Amelieke J. H. Cremers, Ishana Kokmeijer, Laszlo Groh — 2014
• Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal cloneNicholas J. Croucher, William P. Hanage, Simon R. Harris — 2014
• Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine EscapeNicholas J. Croucher, Claire Chewapreecha, William P. Hanage — 2014
• The post-vaccine microevolution of invasive Streptococcus pneumoniaeAmelieke J. H. Cremers, Fredrick M. Mobegi, Marien I. de Jonge — 2015
• Variation in Inflammatory Response during Pneumococcal Infection Is Influenced by Host-Pathogen Interactions but Associated with Animal SurvivalMagda S. Jonczyk, Laura Escudero, Nicolas Sylvius — 2016
• Expression of Streptococcus pneumoniae Bacteriocins Is Induced by Antibiotics via Regulatory Interplay with the Competence SystemMorten Kjos, E. L. Miller, Jelle Slager — 2016

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