SOAP: short oligonucleotide alignment program
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Summary
The program SOAP is designed to handle the huge amounts of short reads generated by parallel sequencing using the new generation Illumina-Solexa sequencing technology, which supports multi-threaded parallel computing and has a batch module for multiple query sets.
- Type
- article
- Published
- 2008-03-01
- Cited by
- 3,442
- References
- 8
- Access
- Open access
- OpenAlex
- https://openalex.org/W2139760555
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:7282875
Keywords
SOAP, Computer science, Oligonucleotide, Sequence (biology), DNA sequencing
References
- Advanced sequencing technologies: methods and goals
- Whole-genome re-sequencing.
- BLAT--the BLAST-like alignment tool.
- SSAHA: a fast search method for large DNA databases.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- Whole-Genome Resequencing
- BLAT---The BLAST-Like Alignment Tool
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- Reduced Representation Bisulfite Sequencing of Human Neutrophils Reveals Widespread Inter-Individual Epigenetic Variation
- FPGA-based acceleration of the RMAP short read mapping tool
- [A review on the bioinformatics pipelines for metagenomic research].
- Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing
- Innovative technology for cancer risk analysis.
- Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results
- Ψ-RA: a parallel sparse index for genomic read alignment
- Simulation and identification of gene regulatory networks
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